Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1689 and EX28DRAFT_1690 are separated by 335 nucleotides EX28DRAFT_1690 and EX28DRAFT_1691 are separated by 4 nucleotides EX28DRAFT_1691 and EX28DRAFT_1692 are separated by 29 nucleotides EX28DRAFT_1692 and EX28DRAFT_1693 are separated by 191 nucleotides
EX28DRAFT_1689: EX28DRAFT_1689 - FOG: EAL domain, at 1,701,539 to 1,702,759
_1689
EX28DRAFT_1690: EX28DRAFT_1690 - hypothetical protein, at 1,703,095 to 1,703,334
_1690
EX28DRAFT_1691: EX28DRAFT_1691 - hypothetical protein, at 1,703,339 to 1,703,659
_1691
EX28DRAFT_1692: EX28DRAFT_1692 - Biofilm development protein YmgB/AriR, at 1,703,689 to 1,703,967
_1692
EX28DRAFT_1693: EX28DRAFT_1693 - formate dehydrogenase, alpha subunit, archaeal-type, at 1,704,159 to 1,706,309
_1693
Position (kb)
1703
1704 Strain fitness (log2 ratio)
-2
-1
0
1 at 1702.730 kb on - strand at 1702.730 kb on - strand at 1702.800 kb on - strand at 1702.803 kb on + strand at 1702.804 kb on - strand at 1702.811 kb on - strand at 1702.811 kb on - strand at 1702.812 kb on + strand at 1702.895 kb on - strand at 1703.143 kb on + strand, within EX28DRAFT_1690 at 1703.143 kb on + strand, within EX28DRAFT_1690 at 1703.300 kb on - strand, within EX28DRAFT_1690 at 1703.607 kb on + strand, within EX28DRAFT_1691 at 1703.607 kb on + strand, within EX28DRAFT_1691 at 1703.608 kb on - strand, within EX28DRAFT_1691 at 1703.617 kb on - strand, within EX28DRAFT_1691 at 1703.675 kb on + strand at 1703.675 kb on + strand at 1703.675 kb on + strand at 1703.676 kb on - strand at 1703.676 kb on - strand at 1703.700 kb on + strand at 1703.814 kb on - strand, within EX28DRAFT_1692 at 1703.966 kb on - strand at 1703.966 kb on - strand at 1704.059 kb on - strand at 1704.143 kb on - strand at 1704.204 kb on - strand at 1704.227 kb on + strand at 1704.234 kb on - strand at 1704.414 kb on + strand, within EX28DRAFT_1693 at 1704.510 kb on + strand, within EX28DRAFT_1693 at 1704.510 kb on + strand, within EX28DRAFT_1693 at 1704.510 kb on + strand, within EX28DRAFT_1693 at 1704.511 kb on - strand, within EX28DRAFT_1693 at 1704.511 kb on - strand, within EX28DRAFT_1693 at 1704.511 kb on - strand, within EX28DRAFT_1693 at 1704.511 kb on - strand, within EX28DRAFT_1693 at 1704.511 kb on - strand, within EX28DRAFT_1693 at 1704.704 kb on + strand, within EX28DRAFT_1693
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,702,730 - -1.8 1,702,730 - -0.1 1,702,800 - +0.3 1,702,803 + -1.5 1,702,804 - -0.3 1,702,811 - -0.1 1,702,811 - -0.9 1,702,812 + +0.1 1,702,895 - -1.1 1,703,143 + EX28DRAFT_1690 0.20 -0.6 1,703,143 + EX28DRAFT_1690 0.20 -0.3 1,703,300 - EX28DRAFT_1690 0.85 +0.7 1,703,607 + EX28DRAFT_1691 0.83 -2.7 1,703,607 + EX28DRAFT_1691 0.83 +0.8 1,703,608 - EX28DRAFT_1691 0.84 -0.1 1,703,617 - EX28DRAFT_1691 0.87 +0.2 1,703,675 + +0.3 1,703,675 + -0.3 1,703,675 + +0.0 1,703,676 - -0.1 1,703,676 - -0.8 1,703,700 + -0.2 1,703,814 - EX28DRAFT_1692 0.45 -1.6 1,703,966 - -0.1 1,703,966 - +0.6 1,704,059 - -0.7 1,704,143 - -0.8 1,704,204 - -0.1 1,704,227 + +0.5 1,704,234 - -0.3 1,704,414 + EX28DRAFT_1693 0.12 +0.2 1,704,510 + EX28DRAFT_1693 0.16 +1.2 1,704,510 + EX28DRAFT_1693 0.16 -0.4 1,704,510 + EX28DRAFT_1693 0.16 +0.3 1,704,511 - EX28DRAFT_1693 0.16 +0.0 1,704,511 - EX28DRAFT_1693 0.16 -0.6 1,704,511 - EX28DRAFT_1693 0.16 +0.5 1,704,511 - EX28DRAFT_1693 0.16 +0.2 1,704,511 - EX28DRAFT_1693 0.16 -0.1 1,704,704 + EX28DRAFT_1693 0.25 -0.8
Or see this region's nucleotide sequence