Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1686 and EX28DRAFT_1687 are separated by 8 nucleotides EX28DRAFT_1687 and EX28DRAFT_1688 are separated by 313 nucleotides
EX28DRAFT_1686: EX28DRAFT_1686 - FeS assembly protein SufB, at 1,698,441 to 1,699,931
_1686
EX28DRAFT_1687: EX28DRAFT_1687 - FeS assembly scaffold SufA, at 1,699,940 to 1,700,308
_1687
EX28DRAFT_1688: EX28DRAFT_1688 - MerR HTH family regulatory protein, at 1,700,622 to 1,701,350
_1688
Position (kb)
1699
1700
1701 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1699.088 kb on - strand, within EX28DRAFT_1686 at 1699.088 kb on - strand, within EX28DRAFT_1686 at 1699.144 kb on + strand, within EX28DRAFT_1686 at 1699.258 kb on + strand, within EX28DRAFT_1686 at 1699.258 kb on + strand, within EX28DRAFT_1686 at 1699.300 kb on + strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.304 kb on + strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.381 kb on + strand, within EX28DRAFT_1686 at 1699.663 kb on + strand, within EX28DRAFT_1686 at 1699.664 kb on - strand, within EX28DRAFT_1686 at 1699.679 kb on - strand, within EX28DRAFT_1686 at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.871 kb on - strand at 1699.871 kb on - strand at 1699.871 kb on - strand at 1699.899 kb on + strand at 1699.899 kb on + strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.919 kb on + strand at 1699.920 kb on - strand at 1699.922 kb on + strand at 1699.931 kb on + strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.941 kb on + strand at 1699.942 kb on - strand at 1700.186 kb on + strand, within EX28DRAFT_1687 at 1700.227 kb on + strand, within EX28DRAFT_1687 at 1700.228 kb on - strand, within EX28DRAFT_1687 at 1700.326 kb on + strand at 1700.341 kb on + strand at 1700.420 kb on - strand at 1700.434 kb on + strand at 1700.435 kb on - strand at 1700.588 kb on + strand at 1700.991 kb on - strand, within EX28DRAFT_1688
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,699,088 - EX28DRAFT_1686 0.43 -1.3 1,699,088 - EX28DRAFT_1686 0.43 +0.7 1,699,144 + EX28DRAFT_1686 0.47 -1.0 1,699,258 + EX28DRAFT_1686 0.55 -0.4 1,699,258 + EX28DRAFT_1686 0.55 -0.9 1,699,300 + EX28DRAFT_1686 0.58 +0.0 1,699,301 - EX28DRAFT_1686 0.58 -0.2 1,699,301 - EX28DRAFT_1686 0.58 -0.2 1,699,301 - EX28DRAFT_1686 0.58 +0.1 1,699,304 + EX28DRAFT_1686 0.58 -0.8 1,699,305 - EX28DRAFT_1686 0.58 -0.4 1,699,305 - EX28DRAFT_1686 0.58 -0.8 1,699,305 - EX28DRAFT_1686 0.58 +0.3 1,699,381 + EX28DRAFT_1686 0.63 +0.1 1,699,663 + EX28DRAFT_1686 0.82 +0.6 1,699,664 - EX28DRAFT_1686 0.82 +1.3 1,699,679 - EX28DRAFT_1686 0.83 -0.9 1,699,870 + -2.0 1,699,870 + -0.2 1,699,870 + -0.8 1,699,870 + -0.2 1,699,870 + +0.1 1,699,871 - +0.1 1,699,871 - -0.2 1,699,871 - -0.1 1,699,899 + +0.0 1,699,899 + -0.2 1,699,900 - -0.3 1,699,900 - +0.6 1,699,900 - +0.4 1,699,900 - +0.1 1,699,919 + +0.0 1,699,920 - -0.3 1,699,922 + -2.9 1,699,931 + +0.6 1,699,932 - +1.0 1,699,932 - -0.4 1,699,932 - +0.0 1,699,932 - -1.5 1,699,932 - -0.3 1,699,941 + -0.4 1,699,942 - +0.4 1,700,186 + EX28DRAFT_1687 0.67 -0.1 1,700,227 + EX28DRAFT_1687 0.78 +1.4 1,700,228 - EX28DRAFT_1687 0.78 +0.0 1,700,326 + +0.6 1,700,341 + -0.2 1,700,420 - +0.2 1,700,434 + +0.5 1,700,435 - -0.1 1,700,588 + -0.2 1,700,991 - EX28DRAFT_1688 0.51 -0.4
Or see this region's nucleotide sequence