Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1687

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1686 and EX28DRAFT_1687 are separated by 8 nucleotidesEX28DRAFT_1687 and EX28DRAFT_1688 are separated by 313 nucleotides EX28DRAFT_1686: EX28DRAFT_1686 - FeS assembly protein SufB, at 1,698,441 to 1,699,931 _1686 EX28DRAFT_1687: EX28DRAFT_1687 - FeS assembly scaffold SufA, at 1,699,940 to 1,700,308 _1687 EX28DRAFT_1688: EX28DRAFT_1688 - MerR HTH family regulatory protein, at 1,700,622 to 1,701,350 _1688 Position (kb) 1699 1700 1701Strain fitness (log2 ratio) -3 -2 -1 0 1at 1699.088 kb on - strand, within EX28DRAFT_1686at 1699.088 kb on - strand, within EX28DRAFT_1686at 1699.144 kb on + strand, within EX28DRAFT_1686at 1699.258 kb on + strand, within EX28DRAFT_1686at 1699.258 kb on + strand, within EX28DRAFT_1686at 1699.300 kb on + strand, within EX28DRAFT_1686at 1699.301 kb on - strand, within EX28DRAFT_1686at 1699.301 kb on - strand, within EX28DRAFT_1686at 1699.301 kb on - strand, within EX28DRAFT_1686at 1699.304 kb on + strand, within EX28DRAFT_1686at 1699.305 kb on - strand, within EX28DRAFT_1686at 1699.305 kb on - strand, within EX28DRAFT_1686at 1699.305 kb on - strand, within EX28DRAFT_1686at 1699.381 kb on + strand, within EX28DRAFT_1686at 1699.663 kb on + strand, within EX28DRAFT_1686at 1699.664 kb on - strand, within EX28DRAFT_1686at 1699.679 kb on - strand, within EX28DRAFT_1686at 1699.870 kb on + strandat 1699.870 kb on + strandat 1699.870 kb on + strandat 1699.870 kb on + strandat 1699.870 kb on + strandat 1699.871 kb on - strandat 1699.871 kb on - strandat 1699.871 kb on - strandat 1699.899 kb on + strandat 1699.899 kb on + strandat 1699.900 kb on - strandat 1699.900 kb on - strandat 1699.900 kb on - strandat 1699.900 kb on - strandat 1699.919 kb on + strandat 1699.920 kb on - strandat 1699.922 kb on + strandat 1699.931 kb on + strandat 1699.932 kb on - strandat 1699.932 kb on - strandat 1699.932 kb on - strandat 1699.932 kb on - strandat 1699.932 kb on - strandat 1699.941 kb on + strandat 1699.942 kb on - strandat 1700.186 kb on + strand, within EX28DRAFT_1687at 1700.227 kb on + strand, within EX28DRAFT_1687at 1700.228 kb on - strand, within EX28DRAFT_1687at 1700.326 kb on + strandat 1700.341 kb on + strandat 1700.420 kb on - strandat 1700.434 kb on + strandat 1700.435 kb on - strandat 1700.588 kb on + strandat 1700.991 kb on - strand, within EX28DRAFT_1688

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
1,699,088 - EX28DRAFT_1686 0.43 -1.3
1,699,088 - EX28DRAFT_1686 0.43 +0.7
1,699,144 + EX28DRAFT_1686 0.47 -1.0
1,699,258 + EX28DRAFT_1686 0.55 -0.4
1,699,258 + EX28DRAFT_1686 0.55 -0.9
1,699,300 + EX28DRAFT_1686 0.58 +0.0
1,699,301 - EX28DRAFT_1686 0.58 -0.2
1,699,301 - EX28DRAFT_1686 0.58 -0.2
1,699,301 - EX28DRAFT_1686 0.58 +0.1
1,699,304 + EX28DRAFT_1686 0.58 -0.8
1,699,305 - EX28DRAFT_1686 0.58 -0.4
1,699,305 - EX28DRAFT_1686 0.58 -0.8
1,699,305 - EX28DRAFT_1686 0.58 +0.3
1,699,381 + EX28DRAFT_1686 0.63 +0.1
1,699,663 + EX28DRAFT_1686 0.82 +0.6
1,699,664 - EX28DRAFT_1686 0.82 +1.3
1,699,679 - EX28DRAFT_1686 0.83 -0.9
1,699,870 + -2.0
1,699,870 + -0.2
1,699,870 + -0.8
1,699,870 + -0.2
1,699,870 + +0.1
1,699,871 - +0.1
1,699,871 - -0.2
1,699,871 - -0.1
1,699,899 + +0.0
1,699,899 + -0.2
1,699,900 - -0.3
1,699,900 - +0.6
1,699,900 - +0.4
1,699,900 - +0.1
1,699,919 + +0.0
1,699,920 - -0.3
1,699,922 + -2.9
1,699,931 + +0.6
1,699,932 - +1.0
1,699,932 - -0.4
1,699,932 - +0.0
1,699,932 - -1.5
1,699,932 - -0.3
1,699,941 + -0.4
1,699,942 - +0.4
1,700,186 + EX28DRAFT_1687 0.67 -0.1
1,700,227 + EX28DRAFT_1687 0.78 +1.4
1,700,228 - EX28DRAFT_1687 0.78 +0.0
1,700,326 + +0.6
1,700,341 + -0.2
1,700,420 - +0.2
1,700,434 + +0.5
1,700,435 - -0.1
1,700,588 + -0.2
1,700,991 - EX28DRAFT_1688 0.51 -0.4

Or see this region's nucleotide sequence