Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1609 and EX28DRAFT_1610 are separated by 199 nucleotides EX28DRAFT_1610 and EX28DRAFT_1611 are separated by 99 nucleotides
EX28DRAFT_1609: EX28DRAFT_1609 - hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region, at 1,625,578 to 1,627,224
_1609
EX28DRAFT_1610: EX28DRAFT_1610 - mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8), at 1,627,424 to 1,628,599
_1610
EX28DRAFT_1611: EX28DRAFT_1611 - Uncharacterized protein conserved in bacteria, at 1,628,699 to 1,630,231
_1611
Position (kb)
1627
1628
1629 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1626.470 kb on + strand, within EX28DRAFT_1609 at 1626.471 kb on - strand, within EX28DRAFT_1609 at 1626.471 kb on - strand, within EX28DRAFT_1609 at 1626.471 kb on - strand, within EX28DRAFT_1609 at 1626.645 kb on - strand, within EX28DRAFT_1609 at 1626.645 kb on - strand, within EX28DRAFT_1609 at 1626.645 kb on - strand, within EX28DRAFT_1609 at 1626.645 kb on - strand, within EX28DRAFT_1609 at 1626.761 kb on + strand, within EX28DRAFT_1609 at 1626.761 kb on + strand, within EX28DRAFT_1609 at 1626.761 kb on + strand, within EX28DRAFT_1609 at 1626.762 kb on - strand, within EX28DRAFT_1609 at 1626.762 kb on - strand, within EX28DRAFT_1609 at 1626.762 kb on - strand, within EX28DRAFT_1609 at 1626.762 kb on - strand, within EX28DRAFT_1609 at 1626.766 kb on - strand, within EX28DRAFT_1609 at 1626.809 kb on + strand, within EX28DRAFT_1609 at 1626.809 kb on + strand, within EX28DRAFT_1609 at 1626.810 kb on - strand, within EX28DRAFT_1609 at 1626.819 kb on - strand, within EX28DRAFT_1609 at 1626.819 kb on - strand, within EX28DRAFT_1609 at 1626.916 kb on - strand, within EX28DRAFT_1609 at 1626.949 kb on - strand, within EX28DRAFT_1609 at 1626.972 kb on - strand, within EX28DRAFT_1609 at 1626.972 kb on - strand, within EX28DRAFT_1609 at 1626.972 kb on - strand, within EX28DRAFT_1609 at 1626.975 kb on + strand, within EX28DRAFT_1609 at 1627.044 kb on + strand, within EX28DRAFT_1609 at 1627.160 kb on + strand at 1627.160 kb on + strand at 1627.237 kb on + strand at 1627.333 kb on + strand at 1627.346 kb on + strand at 1627.359 kb on + strand at 1627.360 kb on - strand at 1627.375 kb on - strand at 1627.395 kb on + strand at 1627.404 kb on - strand at 1627.454 kb on + strand at 1627.491 kb on - strand at 1627.588 kb on - strand, within EX28DRAFT_1610 at 1627.795 kb on + strand, within EX28DRAFT_1610 at 1627.795 kb on + strand, within EX28DRAFT_1610 at 1627.799 kb on + strand, within EX28DRAFT_1610 at 1627.800 kb on - strand, within EX28DRAFT_1610 at 1627.990 kb on + strand, within EX28DRAFT_1610 at 1628.264 kb on + strand, within EX28DRAFT_1610 at 1628.605 kb on + strand at 1628.630 kb on + strand at 1628.635 kb on + strand at 1628.647 kb on + strand at 1628.648 kb on - strand at 1628.650 kb on + strand at 1628.651 kb on - strand at 1628.651 kb on - strand at 1628.734 kb on - strand at 1628.734 kb on - strand at 1628.734 kb on - strand at 1628.894 kb on - strand, within EX28DRAFT_1611 at 1629.127 kb on + strand, within EX28DRAFT_1611 at 1629.139 kb on + strand, within EX28DRAFT_1611 at 1629.139 kb on + strand, within EX28DRAFT_1611 at 1629.139 kb on + strand, within EX28DRAFT_1611 at 1629.139 kb on + strand, within EX28DRAFT_1611 at 1629.140 kb on - strand, within EX28DRAFT_1611 at 1629.140 kb on - strand, within EX28DRAFT_1611 at 1629.143 kb on + strand, within EX28DRAFT_1611 at 1629.144 kb on - strand, within EX28DRAFT_1611 at 1629.144 kb on - strand, within EX28DRAFT_1611 at 1629.314 kb on + strand, within EX28DRAFT_1611 at 1629.317 kb on - strand, within EX28DRAFT_1611 at 1629.424 kb on - strand, within EX28DRAFT_1611 at 1629.506 kb on - strand, within EX28DRAFT_1611 at 1629.515 kb on - strand, within EX28DRAFT_1611
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,626,470 + EX28DRAFT_1609 0.54 -0.3 1,626,471 - EX28DRAFT_1609 0.54 +0.4 1,626,471 - EX28DRAFT_1609 0.54 +0.5 1,626,471 - EX28DRAFT_1609 0.54 -0.4 1,626,645 - EX28DRAFT_1609 0.65 +0.7 1,626,645 - EX28DRAFT_1609 0.65 +0.6 1,626,645 - EX28DRAFT_1609 0.65 -0.4 1,626,645 - EX28DRAFT_1609 0.65 +0.1 1,626,761 + EX28DRAFT_1609 0.72 -0.7 1,626,761 + EX28DRAFT_1609 0.72 +0.2 1,626,761 + EX28DRAFT_1609 0.72 +0.1 1,626,762 - EX28DRAFT_1609 0.72 +0.4 1,626,762 - EX28DRAFT_1609 0.72 +0.1 1,626,762 - EX28DRAFT_1609 0.72 -0.5 1,626,762 - EX28DRAFT_1609 0.72 -0.5 1,626,766 - EX28DRAFT_1609 0.72 -0.3 1,626,809 + EX28DRAFT_1609 0.75 +0.4 1,626,809 + EX28DRAFT_1609 0.75 +0.7 1,626,810 - EX28DRAFT_1609 0.75 -1.9 1,626,819 - EX28DRAFT_1609 0.75 -0.5 1,626,819 - EX28DRAFT_1609 0.75 +0.4 1,626,916 - EX28DRAFT_1609 0.81 -0.1 1,626,949 - EX28DRAFT_1609 0.83 +0.1 1,626,972 - EX28DRAFT_1609 0.85 +0.3 1,626,972 - EX28DRAFT_1609 0.85 -0.2 1,626,972 - EX28DRAFT_1609 0.85 +0.4 1,626,975 + EX28DRAFT_1609 0.85 -0.1 1,627,044 + EX28DRAFT_1609 0.89 +0.3 1,627,160 + -1.4 1,627,160 + -0.8 1,627,237 + -0.7 1,627,333 + +0.4 1,627,346 + +1.3 1,627,359 + -0.5 1,627,360 - +0.1 1,627,375 - +0.6 1,627,395 + +0.6 1,627,404 - +0.8 1,627,454 + +0.2 1,627,491 - +1.2 1,627,588 - EX28DRAFT_1610 0.14 -0.2 1,627,795 + EX28DRAFT_1610 0.32 +0.3 1,627,795 + EX28DRAFT_1610 0.32 +0.2 1,627,799 + EX28DRAFT_1610 0.32 -0.7 1,627,800 - EX28DRAFT_1610 0.32 +1.8 1,627,990 + EX28DRAFT_1610 0.48 +1.0 1,628,264 + EX28DRAFT_1610 0.71 -0.1 1,628,605 + -0.5 1,628,630 + +0.9 1,628,635 + +0.0 1,628,647 + +0.4 1,628,648 - +0.1 1,628,650 + +0.9 1,628,651 - +1.9 1,628,651 - +0.3 1,628,734 - -0.3 1,628,734 - -0.1 1,628,734 - -0.4 1,628,894 - EX28DRAFT_1611 0.13 -0.2 1,629,127 + EX28DRAFT_1611 0.28 -0.2 1,629,139 + EX28DRAFT_1611 0.29 -0.4 1,629,139 + EX28DRAFT_1611 0.29 -0.4 1,629,139 + EX28DRAFT_1611 0.29 +0.2 1,629,139 + EX28DRAFT_1611 0.29 -0.5 1,629,140 - EX28DRAFT_1611 0.29 -0.4 1,629,140 - EX28DRAFT_1611 0.29 -0.2 1,629,143 + EX28DRAFT_1611 0.29 -1.2 1,629,144 - EX28DRAFT_1611 0.29 -0.7 1,629,144 - EX28DRAFT_1611 0.29 -0.4 1,629,314 + EX28DRAFT_1611 0.40 -1.1 1,629,317 - EX28DRAFT_1611 0.40 -1.0 1,629,424 - EX28DRAFT_1611 0.47 -0.2 1,629,506 - EX28DRAFT_1611 0.53 +0.3 1,629,515 - EX28DRAFT_1611 0.53 -2.9
Or see this region's nucleotide sequence