Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1491 and EX28DRAFT_1492 overlap by 66 nucleotides EX28DRAFT_1492 and EX28DRAFT_1493 are separated by 130 nucleotides EX28DRAFT_1493 and EX28DRAFT_1494 are separated by 94 nucleotides
EX28DRAFT_1491: EX28DRAFT_1491 - Chloride channel protein EriC, at 1,505,054 to 1,506,364
_1491
EX28DRAFT_1492: EX28DRAFT_1492 - dethiobiotin synthase, at 1,506,299 to 1,506,994
_1492
EX28DRAFT_1493: EX28DRAFT_1493 - Transcriptional regulator/sugar kinase, at 1,507,125 to 1,508,345
_1493
EX28DRAFT_1494: EX28DRAFT_1494 - Transcriptional regulator, at 1,508,440 to 1,509,372
_1494
Position (kb)
1507
1508
1509 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1506.174 kb on + strand, within EX28DRAFT_1491 at 1506.202 kb on + strand, within EX28DRAFT_1491 at 1506.202 kb on + strand, within EX28DRAFT_1491 at 1506.202 kb on + strand, within EX28DRAFT_1491 at 1506.203 kb on - strand, within EX28DRAFT_1491 at 1506.354 kb on + strand at 1506.355 kb on - strand at 1506.724 kb on + strand, within EX28DRAFT_1492 at 1506.725 kb on - strand, within EX28DRAFT_1492 at 1506.886 kb on - strand, within EX28DRAFT_1492 at 1506.961 kb on + strand at 1506.961 kb on + strand at 1506.961 kb on + strand at 1506.961 kb on + strand at 1506.962 kb on - strand at 1506.962 kb on - strand at 1506.973 kb on + strand at 1507.028 kb on + strand at 1507.043 kb on + strand at 1507.043 kb on + strand at 1507.043 kb on + strand at 1507.093 kb on - strand at 1507.162 kb on + strand at 1507.162 kb on + strand at 1507.163 kb on - strand at 1507.163 kb on - strand at 1507.163 kb on - strand at 1507.163 kb on - strand at 1507.236 kb on - strand at 1507.361 kb on + strand, within EX28DRAFT_1493 at 1507.403 kb on + strand, within EX28DRAFT_1493 at 1507.403 kb on + strand, within EX28DRAFT_1493 at 1507.404 kb on - strand, within EX28DRAFT_1493 at 1507.404 kb on - strand, within EX28DRAFT_1493 at 1507.573 kb on + strand, within EX28DRAFT_1493 at 1507.573 kb on + strand, within EX28DRAFT_1493 at 1507.773 kb on - strand, within EX28DRAFT_1493 at 1507.774 kb on + strand, within EX28DRAFT_1493 at 1507.775 kb on - strand, within EX28DRAFT_1493 at 1507.877 kb on + strand, within EX28DRAFT_1493 at 1508.307 kb on - strand at 1508.307 kb on - strand at 1508.334 kb on - strand at 1508.359 kb on - strand at 1508.388 kb on + strand at 1508.420 kb on + strand at 1508.420 kb on + strand at 1508.497 kb on + strand at 1508.498 kb on - strand at 1508.674 kb on + strand, within EX28DRAFT_1494 at 1508.675 kb on - strand, within EX28DRAFT_1494 at 1508.675 kb on - strand, within EX28DRAFT_1494 at 1508.675 kb on - strand, within EX28DRAFT_1494 at 1508.675 kb on - strand, within EX28DRAFT_1494 at 1508.675 kb on - strand, within EX28DRAFT_1494 at 1508.757 kb on - strand, within EX28DRAFT_1494 at 1508.757 kb on - strand, within EX28DRAFT_1494 at 1509.110 kb on + strand, within EX28DRAFT_1494 at 1509.110 kb on + strand, within EX28DRAFT_1494 at 1509.111 kb on - strand, within EX28DRAFT_1494 at 1509.111 kb on - strand, within EX28DRAFT_1494 at 1509.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,506,174 + EX28DRAFT_1491 0.85 +0.3 1,506,202 + EX28DRAFT_1491 0.88 -0.2 1,506,202 + EX28DRAFT_1491 0.88 -0.3 1,506,202 + EX28DRAFT_1491 0.88 -1.1 1,506,203 - EX28DRAFT_1491 0.88 -1.2 1,506,354 + -0.7 1,506,355 - -0.6 1,506,724 + EX28DRAFT_1492 0.61 -1.5 1,506,725 - EX28DRAFT_1492 0.61 +0.8 1,506,886 - EX28DRAFT_1492 0.84 +0.1 1,506,961 + +0.4 1,506,961 + -0.0 1,506,961 + -0.1 1,506,961 + -0.1 1,506,962 - -1.2 1,506,962 - +1.0 1,506,973 + -0.9 1,507,028 + +0.0 1,507,043 + +0.4 1,507,043 + -0.2 1,507,043 + +0.0 1,507,093 - +0.9 1,507,162 + -0.8 1,507,162 + -1.7 1,507,163 - +0.8 1,507,163 - -1.0 1,507,163 - -0.7 1,507,163 - -0.5 1,507,236 - -1.0 1,507,361 + EX28DRAFT_1493 0.19 -0.4 1,507,403 + EX28DRAFT_1493 0.23 -0.2 1,507,403 + EX28DRAFT_1493 0.23 -0.9 1,507,404 - EX28DRAFT_1493 0.23 -4.3 1,507,404 - EX28DRAFT_1493 0.23 -1.2 1,507,573 + EX28DRAFT_1493 0.37 +0.8 1,507,573 + EX28DRAFT_1493 0.37 -0.8 1,507,773 - EX28DRAFT_1493 0.53 -0.9 1,507,774 + EX28DRAFT_1493 0.53 -0.9 1,507,775 - EX28DRAFT_1493 0.53 -0.8 1,507,877 + EX28DRAFT_1493 0.62 +0.5 1,508,307 - -0.5 1,508,307 - -1.6 1,508,334 - +0.0 1,508,359 - -0.3 1,508,388 + -0.5 1,508,420 + +0.0 1,508,420 + -0.2 1,508,497 + -0.5 1,508,498 - -0.1 1,508,674 + EX28DRAFT_1494 0.25 +0.4 1,508,675 - EX28DRAFT_1494 0.25 -0.6 1,508,675 - EX28DRAFT_1494 0.25 -0.3 1,508,675 - EX28DRAFT_1494 0.25 -0.9 1,508,675 - EX28DRAFT_1494 0.25 +0.1 1,508,675 - EX28DRAFT_1494 0.25 +0.2 1,508,757 - EX28DRAFT_1494 0.34 -2.1 1,508,757 - EX28DRAFT_1494 0.34 +0.3 1,509,110 + EX28DRAFT_1494 0.72 +0.1 1,509,110 + EX28DRAFT_1494 0.72 +1.1 1,509,111 - EX28DRAFT_1494 0.72 +0.3 1,509,111 - EX28DRAFT_1494 0.72 -0.2 1,509,345 - -1.8
Or see this region's nucleotide sequence