Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1473 and EX28DRAFT_1474 are separated by 336 nucleotides EX28DRAFT_1474 and EX28DRAFT_1475 overlap by 77 nucleotides EX28DRAFT_1475 and EX28DRAFT_1476 are separated by 100 nucleotides
EX28DRAFT_1473: EX28DRAFT_1473 - RND family efflux transporter, MFP subunit, at 1,488,510 to 1,489,685
_1473
EX28DRAFT_1474: EX28DRAFT_1474 - AraC-type DNA-binding domain-containing proteins, at 1,490,022 to 1,490,372
_1474
EX28DRAFT_1475: EX28DRAFT_1475 - Transcriptional regulator, at 1,490,296 to 1,491,210
_1475
EX28DRAFT_1476: EX28DRAFT_1476 - Predicted amidohydrolase, at 1,491,311 to 1,492,291
_1476
Position (kb)
1490
1491 Strain fitness (log2 ratio)
-2
-1
0
1 at 1489.034 kb on - strand, within EX28DRAFT_1473 at 1489.439 kb on - strand, within EX28DRAFT_1473 at 1489.439 kb on - strand, within EX28DRAFT_1473 at 1489.517 kb on + strand, within EX28DRAFT_1473 at 1489.692 kb on + strand at 1489.991 kb on - strand at 1490.051 kb on - strand at 1490.157 kb on - strand, within EX28DRAFT_1474 at 1490.219 kb on - strand, within EX28DRAFT_1474 at 1490.308 kb on - strand at 1490.366 kb on - strand at 1490.366 kb on - strand at 1490.371 kb on - strand at 1490.545 kb on - strand, within EX28DRAFT_1475 at 1490.545 kb on - strand, within EX28DRAFT_1475 at 1490.612 kb on - strand, within EX28DRAFT_1475 at 1490.623 kb on + strand, within EX28DRAFT_1475 at 1490.748 kb on - strand, within EX28DRAFT_1475 at 1490.792 kb on - strand, within EX28DRAFT_1475 at 1490.792 kb on - strand, within EX28DRAFT_1475 at 1490.792 kb on - strand, within EX28DRAFT_1475 at 1490.886 kb on + strand, within EX28DRAFT_1475 at 1490.935 kb on - strand, within EX28DRAFT_1475 at 1490.976 kb on + strand, within EX28DRAFT_1475 at 1490.976 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.079 kb on - strand, within EX28DRAFT_1475 at 1491.079 kb on - strand, within EX28DRAFT_1475 at 1491.079 kb on - strand, within EX28DRAFT_1475 at 1491.158 kb on + strand at 1491.162 kb on + strand at 1491.163 kb on - strand at 1491.194 kb on - strand at 1491.255 kb on + strand at 1491.279 kb on - strand at 1491.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,489,034 - EX28DRAFT_1473 0.45 +0.3 1,489,439 - EX28DRAFT_1473 0.79 +0.2 1,489,439 - EX28DRAFT_1473 0.79 +0.5 1,489,517 + EX28DRAFT_1473 0.86 -0.3 1,489,692 + -0.5 1,489,991 - -0.8 1,490,051 - +0.4 1,490,157 - EX28DRAFT_1474 0.38 -2.6 1,490,219 - EX28DRAFT_1474 0.56 -0.3 1,490,308 - -0.1 1,490,366 - +0.9 1,490,366 - -0.7 1,490,371 - -0.4 1,490,545 - EX28DRAFT_1475 0.27 -0.1 1,490,545 - EX28DRAFT_1475 0.27 -2.5 1,490,612 - EX28DRAFT_1475 0.35 +0.1 1,490,623 + EX28DRAFT_1475 0.36 -0.9 1,490,748 - EX28DRAFT_1475 0.49 -1.9 1,490,792 - EX28DRAFT_1475 0.54 -0.5 1,490,792 - EX28DRAFT_1475 0.54 -0.5 1,490,792 - EX28DRAFT_1475 0.54 +0.2 1,490,886 + EX28DRAFT_1475 0.64 +0.0 1,490,935 - EX28DRAFT_1475 0.70 -0.7 1,490,976 + EX28DRAFT_1475 0.74 +0.1 1,490,976 + EX28DRAFT_1475 0.74 +0.1 1,491,078 + EX28DRAFT_1475 0.85 -0.3 1,491,078 + EX28DRAFT_1475 0.85 -0.8 1,491,078 + EX28DRAFT_1475 0.85 +0.2 1,491,078 + EX28DRAFT_1475 0.85 +0.1 1,491,078 + EX28DRAFT_1475 0.85 +0.8 1,491,079 - EX28DRAFT_1475 0.86 -1.2 1,491,079 - EX28DRAFT_1475 0.86 +0.3 1,491,079 - EX28DRAFT_1475 0.86 -1.0 1,491,158 + +0.0 1,491,162 + +0.0 1,491,163 - -0.4 1,491,194 - +0.8 1,491,255 + +0.6 1,491,279 - +0.4 1,491,279 - -0.2
Or see this region's nucleotide sequence