Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1446

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1445 and EX28DRAFT_1446 are separated by 8 nucleotidesEX28DRAFT_1446 and EX28DRAFT_1447 are separated by 65 nucleotidesEX28DRAFT_1447 and EX28DRAFT_1448 are separated by 74 nucleotides EX28DRAFT_1445: EX28DRAFT_1445 - hypothetical protein, at 1,457,185 to 1,459,728 _1445 EX28DRAFT_1446: EX28DRAFT_1446 - hypothetical protein, at 1,459,737 to 1,460,414 _1446 EX28DRAFT_1447: EX28DRAFT_1447 - hypothetical protein, at 1,460,480 to 1,461,058 _1447 EX28DRAFT_1448: EX28DRAFT_1448 - Bacterial regulatory proteins, luxR family, at 1,461,133 to 1,461,714 _1448 Position (kb) 1459 1460 1461Strain fitness (log2 ratio) -3 -2 -1 0 1at 1458.758 kb on + strand, within EX28DRAFT_1445at 1458.759 kb on - strand, within EX28DRAFT_1445at 1458.759 kb on - strand, within EX28DRAFT_1445at 1459.037 kb on + strand, within EX28DRAFT_1445at 1459.049 kb on + strand, within EX28DRAFT_1445at 1459.049 kb on + strand, within EX28DRAFT_1445at 1459.049 kb on + strand, within EX28DRAFT_1445at 1459.049 kb on + strand, within EX28DRAFT_1445at 1459.049 kb on + strand, within EX28DRAFT_1445at 1459.050 kb on - strand, within EX28DRAFT_1445at 1459.050 kb on - strand, within EX28DRAFT_1445at 1459.050 kb on - strand, within EX28DRAFT_1445at 1459.050 kb on - strand, within EX28DRAFT_1445at 1459.050 kb on - strand, within EX28DRAFT_1445at 1459.050 kb on - strand, within EX28DRAFT_1445at 1459.097 kb on + strand, within EX28DRAFT_1445at 1459.143 kb on + strand, within EX28DRAFT_1445at 1459.144 kb on - strand, within EX28DRAFT_1445at 1459.191 kb on + strand, within EX28DRAFT_1445at 1459.192 kb on - strand, within EX28DRAFT_1445at 1459.196 kb on + strand, within EX28DRAFT_1445at 1459.200 kb on - strand, within EX28DRAFT_1445at 1459.200 kb on - strand, within EX28DRAFT_1445at 1459.263 kb on + strand, within EX28DRAFT_1445at 1459.319 kb on + strand, within EX28DRAFT_1445at 1459.356 kb on + strand, within EX28DRAFT_1445at 1459.421 kb on - strand, within EX28DRAFT_1445at 1459.531 kb on - strandat 1459.540 kb on - strandat 1459.749 kb on + strandat 1459.749 kb on + strandat 1459.753 kb on + strandat 1460.006 kb on + strand, within EX28DRAFT_1446at 1460.162 kb on + strand, within EX28DRAFT_1446at 1460.184 kb on + strand, within EX28DRAFT_1446at 1460.238 kb on + strand, within EX28DRAFT_1446at 1460.247 kb on + strand, within EX28DRAFT_1446at 1460.247 kb on + strand, within EX28DRAFT_1446at 1460.248 kb on - strand, within EX28DRAFT_1446at 1460.335 kb on - strand, within EX28DRAFT_1446at 1460.369 kb on + strandat 1460.394 kb on + strandat 1460.394 kb on + strandat 1460.395 kb on - strandat 1460.426 kb on - strandat 1460.426 kb on - strandat 1460.437 kb on + strandat 1460.566 kb on + strand, within EX28DRAFT_1447at 1460.566 kb on + strand, within EX28DRAFT_1447at 1460.567 kb on - strand, within EX28DRAFT_1447at 1460.680 kb on + strand, within EX28DRAFT_1447at 1460.812 kb on + strand, within EX28DRAFT_1447at 1460.848 kb on + strand, within EX28DRAFT_1447at 1460.896 kb on - strand, within EX28DRAFT_1447at 1460.944 kb on + strand, within EX28DRAFT_1447at 1460.944 kb on + strand, within EX28DRAFT_1447at 1460.945 kb on - strand, within EX28DRAFT_1447at 1461.011 kb on - strandat 1461.388 kb on - strand, within EX28DRAFT_1448

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,458,758 + EX28DRAFT_1445 0.62 -0.1
1,458,759 - EX28DRAFT_1445 0.62 +0.0
1,458,759 - EX28DRAFT_1445 0.62 +0.2
1,459,037 + EX28DRAFT_1445 0.73 -0.0
1,459,049 + EX28DRAFT_1445 0.73 -0.5
1,459,049 + EX28DRAFT_1445 0.73 +0.5
1,459,049 + EX28DRAFT_1445 0.73 +0.2
1,459,049 + EX28DRAFT_1445 0.73 -0.8
1,459,049 + EX28DRAFT_1445 0.73 +0.2
1,459,050 - EX28DRAFT_1445 0.73 +0.3
1,459,050 - EX28DRAFT_1445 0.73 +0.1
1,459,050 - EX28DRAFT_1445 0.73 +0.9
1,459,050 - EX28DRAFT_1445 0.73 -0.0
1,459,050 - EX28DRAFT_1445 0.73 +0.8
1,459,050 - EX28DRAFT_1445 0.73 +0.3
1,459,097 + EX28DRAFT_1445 0.75 -0.4
1,459,143 + EX28DRAFT_1445 0.77 -0.4
1,459,144 - EX28DRAFT_1445 0.77 +0.1
1,459,191 + EX28DRAFT_1445 0.79 -0.4
1,459,192 - EX28DRAFT_1445 0.79 -0.1
1,459,196 + EX28DRAFT_1445 0.79 -0.2
1,459,200 - EX28DRAFT_1445 0.79 -0.8
1,459,200 - EX28DRAFT_1445 0.79 +0.3
1,459,263 + EX28DRAFT_1445 0.82 +0.3
1,459,319 + EX28DRAFT_1445 0.84 +0.1
1,459,356 + EX28DRAFT_1445 0.85 +0.9
1,459,421 - EX28DRAFT_1445 0.88 -0.4
1,459,531 - -2.0
1,459,540 - -0.8
1,459,749 + -1.0
1,459,749 + -0.5
1,459,753 + -0.6
1,460,006 + EX28DRAFT_1446 0.40 -0.4
1,460,162 + EX28DRAFT_1446 0.63 +0.9
1,460,184 + EX28DRAFT_1446 0.66 -1.9
1,460,238 + EX28DRAFT_1446 0.74 -0.1
1,460,247 + EX28DRAFT_1446 0.75 -0.3
1,460,247 + EX28DRAFT_1446 0.75 +0.3
1,460,248 - EX28DRAFT_1446 0.75 -0.4
1,460,335 - EX28DRAFT_1446 0.88 -0.8
1,460,369 + -0.6
1,460,394 + -1.3
1,460,394 + -0.2
1,460,395 - -0.8
1,460,426 - -2.2
1,460,426 - -0.0
1,460,437 + -0.7
1,460,566 + EX28DRAFT_1447 0.15 -1.0
1,460,566 + EX28DRAFT_1447 0.15 +0.9
1,460,567 - EX28DRAFT_1447 0.15 +0.4
1,460,680 + EX28DRAFT_1447 0.35 -0.4
1,460,812 + EX28DRAFT_1447 0.57 +0.0
1,460,848 + EX28DRAFT_1447 0.64 -0.3
1,460,896 - EX28DRAFT_1447 0.72 -0.4
1,460,944 + EX28DRAFT_1447 0.80 +0.3
1,460,944 + EX28DRAFT_1447 0.80 -0.2
1,460,945 - EX28DRAFT_1447 0.80 -1.1
1,461,011 - -0.2
1,461,388 - EX28DRAFT_1448 0.44 -3.1

Or see this region's nucleotide sequence