Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1411 and EX28DRAFT_1412 overlap by 8 nucleotides EX28DRAFT_1412 and EX28DRAFT_1413 overlap by 11 nucleotides
EX28DRAFT_1411: EX28DRAFT_1411 - 3-oxoadipyl-CoA thiolase, at 1,419,701 to 1,420,906
_1411
EX28DRAFT_1412: EX28DRAFT_1412 - phenylacetic acid degradation protein PaaD, at 1,420,899 to 1,421,327
_1412
EX28DRAFT_1413: EX28DRAFT_1413 - 3-hydroxyacyl-CoA dehydrogenase PaaC, at 1,421,317 to 1,422,741
_1413
Position (kb)
1420
1421
1422 Strain fitness (log2 ratio)
-1
0
1 at 1419.968 kb on - strand, within EX28DRAFT_1411 at 1419.968 kb on - strand, within EX28DRAFT_1411 at 1420.079 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.421 kb on - strand, within EX28DRAFT_1411 at 1420.999 kb on + strand, within EX28DRAFT_1412 at 1420.999 kb on + strand, within EX28DRAFT_1412 at 1421.016 kb on - strand, within EX28DRAFT_1412 at 1421.327 kb on + strand at 1421.328 kb on - strand at 1421.328 kb on - strand at 1421.328 kb on - strand at 1421.328 kb on - strand at 1421.328 kb on - strand at 1421.331 kb on + strand at 1421.332 kb on - strand at 1421.332 kb on - strand at 1421.332 kb on - strand at 1421.783 kb on + strand, within EX28DRAFT_1413 at 1421.785 kb on + strand, within EX28DRAFT_1413 at 1421.840 kb on + strand, within EX28DRAFT_1413 at 1421.841 kb on - strand, within EX28DRAFT_1413 at 1421.898 kb on - strand, within EX28DRAFT_1413
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,419,968 - EX28DRAFT_1411 0.22 -0.0 1,419,968 - EX28DRAFT_1411 0.22 -0.2 1,420,079 + EX28DRAFT_1411 0.31 -0.0 1,420,420 + EX28DRAFT_1411 0.60 +0.3 1,420,420 + EX28DRAFT_1411 0.60 +0.1 1,420,420 + EX28DRAFT_1411 0.60 -0.4 1,420,421 - EX28DRAFT_1411 0.60 +0.4 1,420,999 + EX28DRAFT_1412 0.23 +0.5 1,420,999 + EX28DRAFT_1412 0.23 +0.8 1,421,016 - EX28DRAFT_1412 0.27 -0.2 1,421,327 + -0.2 1,421,328 - -0.2 1,421,328 - +0.5 1,421,328 - +0.1 1,421,328 - +0.4 1,421,328 - +0.3 1,421,331 + -0.6 1,421,332 - -0.1 1,421,332 - +0.4 1,421,332 - +0.6 1,421,783 + EX28DRAFT_1413 0.33 -0.7 1,421,785 + EX28DRAFT_1413 0.33 -0.5 1,421,840 + EX28DRAFT_1413 0.37 +0.2 1,421,841 - EX28DRAFT_1413 0.37 -0.1 1,421,898 - EX28DRAFT_1413 0.41 +0.4
Or see this region's nucleotide sequence