Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1407 and EX28DRAFT_1408 overlap by 92 nucleotides EX28DRAFT_1408 and EX28DRAFT_1409 are separated by 9 nucleotides
EX28DRAFT_1407: EX28DRAFT_1407 - Beta-lactamase class C and other penicillin binding proteins, at 1,415,501 to 1,416,772
_1407
EX28DRAFT_1408: EX28DRAFT_1408 - phenylacetic acid degradation protein PaaY, at 1,416,681 to 1,417,277
_1408
EX28DRAFT_1409: EX28DRAFT_1409 - transcriptional regulator, PaaX family, at 1,417,287 to 1,418,213
_1409
Position (kb)
1416
1417
1418 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1415.971 kb on + strand, within EX28DRAFT_1407 at 1415.972 kb on - strand, within EX28DRAFT_1407 at 1416.005 kb on + strand, within EX28DRAFT_1407 at 1416.006 kb on - strand, within EX28DRAFT_1407 at 1416.009 kb on + strand, within EX28DRAFT_1407 at 1416.009 kb on + strand, within EX28DRAFT_1407 at 1416.009 kb on + strand, within EX28DRAFT_1407 at 1416.010 kb on - strand, within EX28DRAFT_1407 at 1416.104 kb on + strand, within EX28DRAFT_1407 at 1416.105 kb on - strand, within EX28DRAFT_1407 at 1416.174 kb on + strand, within EX28DRAFT_1407 at 1416.188 kb on - strand, within EX28DRAFT_1407 at 1416.238 kb on - strand, within EX28DRAFT_1407 at 1416.354 kb on + strand, within EX28DRAFT_1407 at 1416.355 kb on - strand, within EX28DRAFT_1407 at 1416.355 kb on - strand, within EX28DRAFT_1407 at 1416.356 kb on + strand, within EX28DRAFT_1407 at 1416.357 kb on - strand, within EX28DRAFT_1407 at 1416.477 kb on + strand, within EX28DRAFT_1407 at 1416.484 kb on + strand, within EX28DRAFT_1407 at 1416.505 kb on + strand, within EX28DRAFT_1407 at 1416.527 kb on + strand, within EX28DRAFT_1407 at 1416.528 kb on - strand, within EX28DRAFT_1407 at 1416.540 kb on - strand, within EX28DRAFT_1407 at 1416.569 kb on + strand, within EX28DRAFT_1407 at 1416.617 kb on - strand, within EX28DRAFT_1407 at 1416.625 kb on + strand, within EX28DRAFT_1407 at 1416.626 kb on - strand, within EX28DRAFT_1407 at 1416.629 kb on + strand, within EX28DRAFT_1407 at 1416.629 kb on + strand, within EX28DRAFT_1407 at 1416.629 kb on + strand, within EX28DRAFT_1407 at 1416.629 kb on + strand, within EX28DRAFT_1407 at 1416.629 kb on + strand, within EX28DRAFT_1407 at 1416.630 kb on - strand, within EX28DRAFT_1407 at 1416.630 kb on - strand, within EX28DRAFT_1407 at 1416.630 kb on - strand, within EX28DRAFT_1407 at 1416.649 kb on - strand at 1416.649 kb on - strand at 1416.649 kb on - strand at 1416.682 kb on + strand at 1416.771 kb on - strand at 1416.803 kb on - strand, within EX28DRAFT_1408 at 1416.970 kb on - strand, within EX28DRAFT_1408 at 1417.171 kb on + strand, within EX28DRAFT_1408 at 1417.225 kb on + strand at 1417.226 kb on - strand at 1417.288 kb on + strand at 1417.289 kb on - strand at 1417.298 kb on + strand at 1417.319 kb on - strand at 1417.322 kb on - strand at 1417.408 kb on + strand, within EX28DRAFT_1409 at 1417.409 kb on - strand, within EX28DRAFT_1409 at 1417.415 kb on + strand, within EX28DRAFT_1409 at 1417.618 kb on + strand, within EX28DRAFT_1409 at 1417.619 kb on - strand, within EX28DRAFT_1409 at 1418.135 kb on - strand at 1418.147 kb on + strand at 1418.231 kb on + strand at 1418.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,415,971 + EX28DRAFT_1407 0.37 +2.0 1,415,972 - EX28DRAFT_1407 0.37 +0.2 1,416,005 + EX28DRAFT_1407 0.40 +0.0 1,416,006 - EX28DRAFT_1407 0.40 -0.1 1,416,009 + EX28DRAFT_1407 0.40 -1.8 1,416,009 + EX28DRAFT_1407 0.40 -0.1 1,416,009 + EX28DRAFT_1407 0.40 +0.6 1,416,010 - EX28DRAFT_1407 0.40 -1.0 1,416,104 + EX28DRAFT_1407 0.47 -0.9 1,416,105 - EX28DRAFT_1407 0.47 -0.4 1,416,174 + EX28DRAFT_1407 0.53 -0.6 1,416,188 - EX28DRAFT_1407 0.54 +0.1 1,416,238 - EX28DRAFT_1407 0.58 -0.2 1,416,354 + EX28DRAFT_1407 0.67 -1.0 1,416,355 - EX28DRAFT_1407 0.67 -0.5 1,416,355 - EX28DRAFT_1407 0.67 +0.9 1,416,356 + EX28DRAFT_1407 0.67 -0.2 1,416,357 - EX28DRAFT_1407 0.67 -1.1 1,416,477 + EX28DRAFT_1407 0.77 +0.4 1,416,484 + EX28DRAFT_1407 0.77 +1.8 1,416,505 + EX28DRAFT_1407 0.79 -0.8 1,416,527 + EX28DRAFT_1407 0.81 -0.2 1,416,528 - EX28DRAFT_1407 0.81 +0.6 1,416,540 - EX28DRAFT_1407 0.82 +0.1 1,416,569 + EX28DRAFT_1407 0.84 -0.1 1,416,617 - EX28DRAFT_1407 0.88 -0.3 1,416,625 + EX28DRAFT_1407 0.88 +0.2 1,416,626 - EX28DRAFT_1407 0.88 +0.5 1,416,629 + EX28DRAFT_1407 0.89 -0.5 1,416,629 + EX28DRAFT_1407 0.89 +0.2 1,416,629 + EX28DRAFT_1407 0.89 -0.8 1,416,629 + EX28DRAFT_1407 0.89 +0.4 1,416,629 + EX28DRAFT_1407 0.89 +0.0 1,416,630 - EX28DRAFT_1407 0.89 +0.1 1,416,630 - EX28DRAFT_1407 0.89 -0.0 1,416,630 - EX28DRAFT_1407 0.89 -0.3 1,416,649 - -0.7 1,416,649 - +0.7 1,416,649 - -0.0 1,416,682 + +0.1 1,416,771 - +0.3 1,416,803 - EX28DRAFT_1408 0.20 -0.7 1,416,970 - EX28DRAFT_1408 0.48 +0.1 1,417,171 + EX28DRAFT_1408 0.82 -1.1 1,417,225 + -1.4 1,417,226 - -0.6 1,417,288 + -0.8 1,417,289 - -0.7 1,417,298 + -0.8 1,417,319 - +1.1 1,417,322 - +1.2 1,417,408 + EX28DRAFT_1409 0.13 -1.0 1,417,409 - EX28DRAFT_1409 0.13 -1.3 1,417,415 + EX28DRAFT_1409 0.14 -0.4 1,417,618 + EX28DRAFT_1409 0.36 -0.1 1,417,619 - EX28DRAFT_1409 0.36 +0.1 1,418,135 - +0.2 1,418,147 + +0.2 1,418,231 + +0.3 1,418,259 - +0.1
Or see this region's nucleotide sequence