Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1396 and EX28DRAFT_1397 are separated by 64 nucleotides EX28DRAFT_1397 and EX28DRAFT_1398 are separated by 267 nucleotides EX28DRAFT_1398 and EX28DRAFT_1399 are separated by 52 nucleotides
EX28DRAFT_1396: EX28DRAFT_1396 - Amidases related to nicotinamidase, at 1,407,595 to 1,408,134
_1396
EX28DRAFT_1397: EX28DRAFT_1397 - cupin fold metalloprotein, WbuC family, at 1,408,199 to 1,408,675
_1397
EX28DRAFT_1398: EX28DRAFT_1398 - hypothetical protein, at 1,408,943 to 1,409,413
_1398
EX28DRAFT_1399: EX28DRAFT_1399 - Transcriptional regulator, at 1,409,466 to 1,410,389
_1399
Position (kb)
1408
1409
1410 Strain fitness (log2 ratio)
-1
0
1
2 at 1408.012 kb on - strand, within EX28DRAFT_1396 at 1408.120 kb on - strand at 1408.422 kb on - strand, within EX28DRAFT_1397 at 1408.422 kb on - strand, within EX28DRAFT_1397 at 1408.533 kb on + strand, within EX28DRAFT_1397 at 1408.533 kb on + strand, within EX28DRAFT_1397 at 1408.533 kb on + strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.537 kb on + strand, within EX28DRAFT_1397 at 1408.592 kb on + strand, within EX28DRAFT_1397 at 1408.593 kb on - strand, within EX28DRAFT_1397 at 1408.593 kb on - strand, within EX28DRAFT_1397 at 1408.664 kb on - strand at 1408.677 kb on + strand at 1408.677 kb on + strand at 1408.677 kb on + strand at 1408.677 kb on + strand at 1408.678 kb on - strand at 1408.731 kb on + strand at 1408.731 kb on + strand at 1408.731 kb on + strand at 1408.732 kb on - strand at 1408.827 kb on - strand at 1408.968 kb on + strand at 1409.038 kb on + strand, within EX28DRAFT_1398 at 1409.249 kb on + strand, within EX28DRAFT_1398 at 1409.249 kb on + strand, within EX28DRAFT_1398 at 1409.447 kb on + strand at 1409.558 kb on + strand at 1409.597 kb on - strand, within EX28DRAFT_1399 at 1409.597 kb on - strand, within EX28DRAFT_1399 at 1409.831 kb on + strand, within EX28DRAFT_1399 at 1409.831 kb on + strand, within EX28DRAFT_1399 at 1409.832 kb on - strand, within EX28DRAFT_1399 at 1409.971 kb on + strand, within EX28DRAFT_1399 at 1410.062 kb on + strand, within EX28DRAFT_1399 at 1410.159 kb on - strand, within EX28DRAFT_1399 at 1410.194 kb on + strand, within EX28DRAFT_1399 at 1410.195 kb on - strand, within EX28DRAFT_1399 at 1410.303 kb on - strand at 1410.370 kb on + strand at 1410.370 kb on + strand at 1410.370 kb on + strand at 1410.371 kb on - strand at 1410.389 kb on + strand at 1410.390 kb on - strand at 1410.390 kb on - strand at 1410.411 kb on + strand at 1410.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,408,012 - EX28DRAFT_1396 0.77 -0.4 1,408,120 - +1.1 1,408,422 - EX28DRAFT_1397 0.47 -0.1 1,408,422 - EX28DRAFT_1397 0.47 -0.4 1,408,533 + EX28DRAFT_1397 0.70 +0.1 1,408,533 + EX28DRAFT_1397 0.70 -0.4 1,408,533 + EX28DRAFT_1397 0.70 +0.9 1,408,534 - EX28DRAFT_1397 0.70 -0.6 1,408,534 - EX28DRAFT_1397 0.70 +2.0 1,408,534 - EX28DRAFT_1397 0.70 -0.2 1,408,534 - EX28DRAFT_1397 0.70 +0.5 1,408,537 + EX28DRAFT_1397 0.71 +0.2 1,408,592 + EX28DRAFT_1397 0.82 +0.9 1,408,593 - EX28DRAFT_1397 0.83 +0.5 1,408,593 - EX28DRAFT_1397 0.83 -0.4 1,408,664 - -0.5 1,408,677 + -0.0 1,408,677 + +0.4 1,408,677 + -0.4 1,408,677 + -0.6 1,408,678 - +0.4 1,408,731 + -0.6 1,408,731 + -0.1 1,408,731 + -0.1 1,408,732 - +1.7 1,408,827 - +0.3 1,408,968 + +0.1 1,409,038 + EX28DRAFT_1398 0.20 -1.4 1,409,249 + EX28DRAFT_1398 0.65 -0.3 1,409,249 + EX28DRAFT_1398 0.65 -0.5 1,409,447 + +0.1 1,409,558 + -0.4 1,409,597 - EX28DRAFT_1399 0.14 -0.1 1,409,597 - EX28DRAFT_1399 0.14 -0.3 1,409,831 + EX28DRAFT_1399 0.40 -0.8 1,409,831 + EX28DRAFT_1399 0.40 -0.1 1,409,832 - EX28DRAFT_1399 0.40 -0.3 1,409,971 + EX28DRAFT_1399 0.55 -0.5 1,410,062 + EX28DRAFT_1399 0.65 +0.2 1,410,159 - EX28DRAFT_1399 0.75 -0.0 1,410,194 + EX28DRAFT_1399 0.79 -0.5 1,410,195 - EX28DRAFT_1399 0.79 -0.6 1,410,303 - +0.2 1,410,370 + +0.9 1,410,370 + -0.5 1,410,370 + +0.7 1,410,371 - +0.3 1,410,389 + -0.1 1,410,390 - +0.0 1,410,390 - -0.2 1,410,411 + -0.8 1,410,412 - -0.9
Or see this region's nucleotide sequence