Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1386

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1384 and EX28DRAFT_1385 are separated by 64 nucleotidesEX28DRAFT_1385 and EX28DRAFT_1386 overlap by 4 nucleotidesEX28DRAFT_1386 and EX28DRAFT_1387 are separated by 99 nucleotides EX28DRAFT_1384: EX28DRAFT_1384 - Predicted ester cyclase, at 1,395,686 to 1,396,225 _1384 EX28DRAFT_1385: EX28DRAFT_1385 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,396,290 to 1,397,009 _1385 EX28DRAFT_1386: EX28DRAFT_1386 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 1,397,006 to 1,398,121 _1386 EX28DRAFT_1387: EX28DRAFT_1387 - Transcriptional regulator, at 1,398,221 to 1,399,132 _1387 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1396.115 kb on + strand, within EX28DRAFT_1384at 1396.117 kb on + strand, within EX28DRAFT_1384at 1396.188 kb on - strandat 1396.210 kb on - strandat 1396.217 kb on - strandat 1396.239 kb on - strandat 1396.243 kb on + strandat 1396.244 kb on - strandat 1396.246 kb on + strandat 1396.247 kb on - strandat 1396.247 kb on - strandat 1396.247 kb on - strandat 1396.316 kb on + strandat 1396.466 kb on - strand, within EX28DRAFT_1385at 1396.661 kb on - strand, within EX28DRAFT_1385at 1396.923 kb on - strand, within EX28DRAFT_1385at 1396.989 kb on - strandat 1397.000 kb on + strandat 1397.001 kb on - strandat 1397.009 kb on + strandat 1397.032 kb on - strandat 1397.048 kb on - strandat 1397.048 kb on - strandat 1397.283 kb on - strand, within EX28DRAFT_1386at 1397.410 kb on + strand, within EX28DRAFT_1386at 1397.468 kb on + strand, within EX28DRAFT_1386at 1397.960 kb on + strand, within EX28DRAFT_1386at 1397.960 kb on + strand, within EX28DRAFT_1386at 1397.961 kb on - strand, within EX28DRAFT_1386at 1398.112 kb on + strandat 1398.113 kb on - strandat 1398.157 kb on - strandat 1398.157 kb on - strandat 1398.447 kb on + strand, within EX28DRAFT_1387at 1398.536 kb on + strand, within EX28DRAFT_1387at 1398.542 kb on - strand, within EX28DRAFT_1387at 1398.736 kb on + strand, within EX28DRAFT_1387

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,396,115 + EX28DRAFT_1384 0.79 +2.4
1,396,117 + EX28DRAFT_1384 0.80 +0.1
1,396,188 - -0.8
1,396,210 - +0.7
1,396,217 - +1.5
1,396,239 - +0.2
1,396,243 + -0.1
1,396,244 - +0.0
1,396,246 + +0.2
1,396,247 - -3.6
1,396,247 - -0.1
1,396,247 - +0.6
1,396,316 + +0.0
1,396,466 - EX28DRAFT_1385 0.24 +0.8
1,396,661 - EX28DRAFT_1385 0.52 -0.2
1,396,923 - EX28DRAFT_1385 0.88 +0.3
1,396,989 - +0.3
1,397,000 + -1.6
1,397,001 - -1.7
1,397,009 + -0.4
1,397,032 - -0.5
1,397,048 - +0.1
1,397,048 - +0.0
1,397,283 - EX28DRAFT_1386 0.25 +1.0
1,397,410 + EX28DRAFT_1386 0.36 -0.7
1,397,468 + EX28DRAFT_1386 0.41 -0.2
1,397,960 + EX28DRAFT_1386 0.85 +0.2
1,397,960 + EX28DRAFT_1386 0.85 +1.4
1,397,961 - EX28DRAFT_1386 0.86 +0.1
1,398,112 + +0.5
1,398,113 - +0.9
1,398,157 - +1.3
1,398,157 - +0.2
1,398,447 + EX28DRAFT_1387 0.25 +0.3
1,398,536 + EX28DRAFT_1387 0.35 -0.5
1,398,542 - EX28DRAFT_1387 0.35 -0.4
1,398,736 + EX28DRAFT_1387 0.56 +0.0

Or see this region's nucleotide sequence