Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1308

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1306 and EX28DRAFT_1307 are separated by 271 nucleotidesEX28DRAFT_1307 and EX28DRAFT_1308 overlap by 4 nucleotidesEX28DRAFT_1308 and EX28DRAFT_1309 overlap by 4 nucleotidesEX28DRAFT_1309 and EX28DRAFT_1310 are separated by 1 nucleotides EX28DRAFT_1306: EX28DRAFT_1306 - hypothetical protein, at 1,312,844 to 1,313,353 _1306 EX28DRAFT_1307: EX28DRAFT_1307 - hypothetical protein, at 1,313,625 to 1,313,978 _1307 EX28DRAFT_1308: EX28DRAFT_1308 - hypothetical protein, at 1,313,975 to 1,314,172 _1308 EX28DRAFT_1309: EX28DRAFT_1309 - hypothetical protein, at 1,314,169 to 1,314,744 _1309 EX28DRAFT_1310: EX28DRAFT_1310 - phage replication protein P, at 1,314,746 to 1,315,435 _1310 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -2 -1 0 1at 1313.089 kb on - strand, within EX28DRAFT_1306at 1313.345 kb on - strandat 1313.410 kb on - strandat 1313.410 kb on - strandat 1313.437 kb on - strandat 1313.437 kb on - strandat 1313.470 kb on - strandat 1313.470 kb on - strandat 1313.492 kb on - strandat 1313.626 kb on + strandat 1313.627 kb on - strandat 1313.845 kb on - strand, within EX28DRAFT_1307at 1313.883 kb on + strand, within EX28DRAFT_1307at 1313.919 kb on + strand, within EX28DRAFT_1307at 1313.952 kb on + strandat 1314.012 kb on - strand, within EX28DRAFT_1308at 1314.113 kb on + strand, within EX28DRAFT_1308at 1314.179 kb on - strandat 1314.179 kb on - strandat 1314.355 kb on + strand, within EX28DRAFT_1309at 1314.437 kb on - strand, within EX28DRAFT_1309at 1314.667 kb on + strand, within EX28DRAFT_1309at 1314.713 kb on + strandat 1314.713 kb on + strandat 1314.714 kb on - strandat 1314.734 kb on - strandat 1314.932 kb on + strand, within EX28DRAFT_1310at 1314.978 kb on + strand, within EX28DRAFT_1310at 1314.979 kb on - strand, within EX28DRAFT_1310

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,313,089 - EX28DRAFT_1306 0.48 +0.3
1,313,345 - -0.5
1,313,410 - +0.1
1,313,410 - -1.3
1,313,437 - +0.2
1,313,437 - -0.0
1,313,470 - -1.1
1,313,470 - -2.2
1,313,492 - +0.1
1,313,626 + +0.5
1,313,627 - +0.4
1,313,845 - EX28DRAFT_1307 0.62 +1.0
1,313,883 + EX28DRAFT_1307 0.73 -0.8
1,313,919 + EX28DRAFT_1307 0.83 -0.4
1,313,952 + -0.3
1,314,012 - EX28DRAFT_1308 0.19 -1.7
1,314,113 + EX28DRAFT_1308 0.70 -0.2
1,314,179 - -0.3
1,314,179 - -0.4
1,314,355 + EX28DRAFT_1309 0.32 +0.2
1,314,437 - EX28DRAFT_1309 0.47 +0.1
1,314,667 + EX28DRAFT_1309 0.86 +0.5
1,314,713 + +0.5
1,314,713 + +0.4
1,314,714 - +0.1
1,314,734 - +1.2
1,314,932 + EX28DRAFT_1310 0.27 -0.4
1,314,978 + EX28DRAFT_1310 0.34 +1.0
1,314,979 - EX28DRAFT_1310 0.34 -0.1

Or see this region's nucleotide sequence