Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1274 and EX28DRAFT_1275 are separated by 12 nucleotides EX28DRAFT_1275 and EX28DRAFT_1276 are separated by 57 nucleotides EX28DRAFT_1276 and EX28DRAFT_1277 are separated by 64 nucleotides EX28DRAFT_1277 and EX28DRAFT_1278 overlap by 4 nucleotides EX28DRAFT_1278 and EX28DRAFT_1279 are separated by 62 nucleotides
EX28DRAFT_1274: EX28DRAFT_1274 - hypothetical protein, at 1,291,120 to 1,294,545
_1274
EX28DRAFT_1275: EX28DRAFT_1275 - hypothetical protein, at 1,294,558 to 1,295,229
_1275
EX28DRAFT_1276: EX28DRAFT_1276 - Bacterial Ig-like domain (group 2), at 1,295,287 to 1,296,030
_1276
EX28DRAFT_1277: EX28DRAFT_1277 - hypothetical protein, at 1,296,095 to 1,296,478
_1277
EX28DRAFT_1278: EX28DRAFT_1278 - hypothetical protein, at 1,296,475 to 1,296,915
_1278
EX28DRAFT_1279: EX28DRAFT_1279 - hypothetical protein, at 1,296,978 to 1,297,265
_1279
Position (kb) 1295
1296
1297 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1294.601 kb on + strand at 1294.622 kb on + strand at 1294.656 kb on - strand, within EX28DRAFT_1275 at 1294.693 kb on + strand, within EX28DRAFT_1275 at 1294.748 kb on + strand, within EX28DRAFT_1275 at 1294.799 kb on - strand, within EX28DRAFT_1275 at 1294.799 kb on - strand, within EX28DRAFT_1275 at 1295.165 kb on + strand at 1295.165 kb on + strand at 1295.165 kb on + strand at 1295.230 kb on - strand at 1295.611 kb on + strand, within EX28DRAFT_1276 at 1295.661 kb on - strand, within EX28DRAFT_1276 at 1295.766 kb on - strand, within EX28DRAFT_1276 at 1295.874 kb on + strand, within EX28DRAFT_1276 at 1295.911 kb on - strand, within EX28DRAFT_1276 at 1296.025 kb on - strand at 1296.051 kb on - strand at 1296.051 kb on - strand at 1296.080 kb on - strand at 1296.135 kb on - strand, within EX28DRAFT_1277 at 1296.135 kb on - strand, within EX28DRAFT_1277 at 1296.228 kb on + strand, within EX28DRAFT_1277 at 1296.393 kb on + strand, within EX28DRAFT_1277 at 1296.393 kb on + strand, within EX28DRAFT_1277 at 1296.394 kb on - strand, within EX28DRAFT_1277 at 1296.394 kb on - strand, within EX28DRAFT_1277 at 1296.394 kb on - strand, within EX28DRAFT_1277 at 1296.513 kb on + strand at 1296.514 kb on - strand at 1296.514 kb on - strand at 1296.573 kb on - strand, within EX28DRAFT_1278 at 1296.683 kb on + strand, within EX28DRAFT_1278 at 1296.684 kb on - strand, within EX28DRAFT_1278 at 1296.684 kb on - strand, within EX28DRAFT_1278 at 1296.782 kb on + strand, within EX28DRAFT_1278 at 1296.783 kb on - strand, within EX28DRAFT_1278 at 1296.783 kb on - strand, within EX28DRAFT_1278 at 1296.785 kb on + strand, within EX28DRAFT_1278 at 1296.866 kb on + strand, within EX28DRAFT_1278 at 1296.866 kb on + strand, within EX28DRAFT_1278 at 1297.017 kb on - strand, within EX28DRAFT_1279
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,294,601 + +0.7 1,294,622 + -0.0 1,294,656 - EX28DRAFT_1275 0.15 +0.2 1,294,693 + EX28DRAFT_1275 0.20 +1.2 1,294,748 + EX28DRAFT_1275 0.28 -0.4 1,294,799 - EX28DRAFT_1275 0.36 -0.9 1,294,799 - EX28DRAFT_1275 0.36 -0.1 1,295,165 + +0.3 1,295,165 + +0.9 1,295,165 + +0.5 1,295,230 - -2.0 1,295,611 + EX28DRAFT_1276 0.44 +0.1 1,295,661 - EX28DRAFT_1276 0.50 -0.9 1,295,766 - EX28DRAFT_1276 0.64 -0.9 1,295,874 + EX28DRAFT_1276 0.79 +0.0 1,295,911 - EX28DRAFT_1276 0.84 -3.1 1,296,025 - -0.4 1,296,051 - -0.1 1,296,051 - +0.0 1,296,080 - +0.8 1,296,135 - EX28DRAFT_1277 0.10 +1.0 1,296,135 - EX28DRAFT_1277 0.10 +1.1 1,296,228 + EX28DRAFT_1277 0.35 +0.6 1,296,393 + EX28DRAFT_1277 0.78 -0.0 1,296,393 + EX28DRAFT_1277 0.78 -0.3 1,296,394 - EX28DRAFT_1277 0.78 +0.9 1,296,394 - EX28DRAFT_1277 0.78 +0.2 1,296,394 - EX28DRAFT_1277 0.78 +0.3 1,296,513 + +0.7 1,296,514 - +0.1 1,296,514 - -0.8 1,296,573 - EX28DRAFT_1278 0.22 +0.3 1,296,683 + EX28DRAFT_1278 0.47 -0.6 1,296,684 - EX28DRAFT_1278 0.47 -0.7 1,296,684 - EX28DRAFT_1278 0.47 +1.6 1,296,782 + EX28DRAFT_1278 0.70 -2.6 1,296,783 - EX28DRAFT_1278 0.70 -2.5 1,296,783 - EX28DRAFT_1278 0.70 -1.2 1,296,785 + EX28DRAFT_1278 0.70 -0.5 1,296,866 + EX28DRAFT_1278 0.89 -3.7 1,296,866 + EX28DRAFT_1278 0.89 +0.3 1,297,017 - EX28DRAFT_1279 0.14 +0.8
Or see this region's nucleotide sequence