Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1200 and EX28DRAFT_1201 are separated by 84 nucleotides EX28DRAFT_1201 and EX28DRAFT_1202 are separated by 27 nucleotides EX28DRAFT_1202 and EX28DRAFT_1203 are separated by 177 nucleotides
EX28DRAFT_1200: EX28DRAFT_1200 - Acetyltransferases, at 1,220,582 to 1,221,064
_1200
EX28DRAFT_1201: EX28DRAFT_1201 - phenazine biosynthesis protein PhzF family, at 1,221,149 to 1,221,940
_1201
EX28DRAFT_1202: EX28DRAFT_1202 - phenazine biosynthesis protein PhzF family, at 1,221,968 to 1,222,756
_1202
EX28DRAFT_1203: EX28DRAFT_1203 - Arabinose efflux permease, at 1,222,934 to 1,224,130
_1203
Position (kb)
1221
1222
1223 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1220.979 kb on + strand, within EX28DRAFT_1200 at 1221.052 kb on + strand at 1221.061 kb on - strand at 1221.061 kb on - strand at 1221.085 kb on + strand at 1221.085 kb on + strand at 1221.086 kb on - strand at 1221.087 kb on + strand at 1221.095 kb on + strand at 1221.095 kb on + strand at 1221.095 kb on + strand at 1221.096 kb on - strand at 1221.124 kb on + strand at 1221.125 kb on - strand at 1221.125 kb on - strand at 1221.127 kb on + strand at 1221.127 kb on + strand at 1221.128 kb on - strand at 1221.128 kb on - strand at 1221.128 kb on - strand at 1221.132 kb on + strand at 1221.132 kb on + strand at 1221.132 kb on + strand at 1221.134 kb on + strand at 1221.175 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.384 kb on + strand, within EX28DRAFT_1201 at 1221.492 kb on + strand, within EX28DRAFT_1201 at 1221.492 kb on + strand, within EX28DRAFT_1201 at 1221.492 kb on + strand, within EX28DRAFT_1201 at 1221.493 kb on - strand, within EX28DRAFT_1201 at 1221.734 kb on - strand, within EX28DRAFT_1201 at 1221.811 kb on + strand, within EX28DRAFT_1201 at 1221.869 kb on + strand at 1221.870 kb on - strand at 1221.997 kb on - strand at 1222.049 kb on + strand, within EX28DRAFT_1202 at 1222.049 kb on + strand, within EX28DRAFT_1202 at 1222.204 kb on - strand, within EX28DRAFT_1202 at 1222.237 kb on + strand, within EX28DRAFT_1202 at 1222.237 kb on + strand, within EX28DRAFT_1202 at 1222.237 kb on + strand, within EX28DRAFT_1202 at 1222.578 kb on - strand, within EX28DRAFT_1202 at 1222.731 kb on - strand at 1222.731 kb on - strand at 1222.791 kb on + strand at 1222.793 kb on + strand at 1222.793 kb on + strand at 1222.830 kb on + strand at 1222.888 kb on + strand at 1222.888 kb on + strand at 1222.888 kb on + strand at 1222.933 kb on + strand at 1222.933 kb on + strand at 1222.934 kb on - strand at 1223.089 kb on + strand, within EX28DRAFT_1203 at 1223.089 kb on + strand, within EX28DRAFT_1203 at 1223.090 kb on - strand, within EX28DRAFT_1203 at 1223.102 kb on + strand, within EX28DRAFT_1203 at 1223.102 kb on + strand, within EX28DRAFT_1203 at 1223.102 kb on + strand, within EX28DRAFT_1203 at 1223.102 kb on + strand, within EX28DRAFT_1203 at 1223.102 kb on + strand, within EX28DRAFT_1203 at 1223.102 kb on + strand, within EX28DRAFT_1203 at 1223.103 kb on - strand, within EX28DRAFT_1203 at 1223.236 kb on + strand, within EX28DRAFT_1203 at 1223.412 kb on + strand, within EX28DRAFT_1203 at 1223.478 kb on + strand, within EX28DRAFT_1203 at 1223.489 kb on - strand, within EX28DRAFT_1203 at 1223.576 kb on + strand, within EX28DRAFT_1203 at 1223.576 kb on + strand, within EX28DRAFT_1203 at 1223.576 kb on + strand, within EX28DRAFT_1203 at 1223.576 kb on + strand, within EX28DRAFT_1203 at 1223.577 kb on - strand, within EX28DRAFT_1203 at 1223.577 kb on - strand, within EX28DRAFT_1203 at 1223.610 kb on - strand, within EX28DRAFT_1203 at 1223.618 kb on + strand, within EX28DRAFT_1203 at 1223.618 kb on + strand, within EX28DRAFT_1203 at 1223.625 kb on - strand, within EX28DRAFT_1203
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,220,979 + EX28DRAFT_1200 0.82 +0.4 1,221,052 + +0.2 1,221,061 - +0.1 1,221,061 - +0.5 1,221,085 + +0.8 1,221,085 + +0.8 1,221,086 - -0.7 1,221,087 + -0.4 1,221,095 + +3.1 1,221,095 + -0.4 1,221,095 + +0.5 1,221,096 - -0.1 1,221,124 + -0.5 1,221,125 - -0.5 1,221,125 - -0.4 1,221,127 + +0.2 1,221,127 + +0.3 1,221,128 - +1.2 1,221,128 - -0.1 1,221,128 - -0.2 1,221,132 + +0.7 1,221,132 + -0.3 1,221,132 + +0.4 1,221,134 + +0.6 1,221,175 + -0.1 1,221,177 + +0.4 1,221,177 + +1.9 1,221,177 + +0.4 1,221,177 + +0.4 1,221,177 + -0.8 1,221,177 + +0.5 1,221,177 + +0.0 1,221,178 - -0.5 1,221,178 - -0.3 1,221,178 - -0.0 1,221,178 - -1.4 1,221,178 - -3.2 1,221,384 + EX28DRAFT_1201 0.30 -0.0 1,221,492 + EX28DRAFT_1201 0.43 -0.9 1,221,492 + EX28DRAFT_1201 0.43 -0.3 1,221,492 + EX28DRAFT_1201 0.43 -0.6 1,221,493 - EX28DRAFT_1201 0.43 +0.6 1,221,734 - EX28DRAFT_1201 0.74 +0.3 1,221,811 + EX28DRAFT_1201 0.84 -0.1 1,221,869 + +1.2 1,221,870 - +0.6 1,221,997 - +0.2 1,222,049 + EX28DRAFT_1202 0.10 +0.4 1,222,049 + EX28DRAFT_1202 0.10 +0.2 1,222,204 - EX28DRAFT_1202 0.30 +0.0 1,222,237 + EX28DRAFT_1202 0.34 +0.5 1,222,237 + EX28DRAFT_1202 0.34 +0.9 1,222,237 + EX28DRAFT_1202 0.34 +1.3 1,222,578 - EX28DRAFT_1202 0.77 -0.2 1,222,731 - +0.3 1,222,731 - -1.7 1,222,791 + -1.5 1,222,793 + -1.4 1,222,793 + -0.2 1,222,830 + +0.4 1,222,888 + -0.5 1,222,888 + -0.5 1,222,888 + +0.7 1,222,933 + -0.4 1,222,933 + -0.1 1,222,934 - -0.6 1,223,089 + EX28DRAFT_1203 0.13 +0.3 1,223,089 + EX28DRAFT_1203 0.13 -0.1 1,223,090 - EX28DRAFT_1203 0.13 +0.3 1,223,102 + EX28DRAFT_1203 0.14 -0.8 1,223,102 + EX28DRAFT_1203 0.14 +0.6 1,223,102 + EX28DRAFT_1203 0.14 -0.1 1,223,102 + EX28DRAFT_1203 0.14 +0.4 1,223,102 + EX28DRAFT_1203 0.14 +1.1 1,223,102 + EX28DRAFT_1203 0.14 -0.2 1,223,103 - EX28DRAFT_1203 0.14 +0.2 1,223,236 + EX28DRAFT_1203 0.25 +0.3 1,223,412 + EX28DRAFT_1203 0.40 -0.3 1,223,478 + EX28DRAFT_1203 0.45 -0.2 1,223,489 - EX28DRAFT_1203 0.46 -0.3 1,223,576 + EX28DRAFT_1203 0.54 +0.3 1,223,576 + EX28DRAFT_1203 0.54 -0.8 1,223,576 + EX28DRAFT_1203 0.54 -0.1 1,223,576 + EX28DRAFT_1203 0.54 +0.1 1,223,577 - EX28DRAFT_1203 0.54 +1.6 1,223,577 - EX28DRAFT_1203 0.54 -0.0 1,223,610 - EX28DRAFT_1203 0.56 +1.9 1,223,618 + EX28DRAFT_1203 0.57 -0.2 1,223,618 + EX28DRAFT_1203 0.57 +0.3 1,223,625 - EX28DRAFT_1203 0.58 -1.3
Or see this region's nucleotide sequence