Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1124

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1123 and EX28DRAFT_1124 overlap by 1 nucleotidesEX28DRAFT_1124 and EX28DRAFT_1125 are separated by 28 nucleotides EX28DRAFT_1123: EX28DRAFT_1123 - PTS system, sucrose-specific IIBC component, at 1,137,160 to 1,138,530 _1123 EX28DRAFT_1124: EX28DRAFT_1124 - sucrose-6-phosphate hydrolase, at 1,138,530 to 1,139,936 _1124 EX28DRAFT_1125: EX28DRAFT_1125 - D-fructose-responsive transcription factor, at 1,139,965 to 1,140,981 _1125 Position (kb) 1138 1139 1140Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1137.566 kb on - strand, within EX28DRAFT_1123at 1137.595 kb on + strand, within EX28DRAFT_1123at 1137.595 kb on + strand, within EX28DRAFT_1123at 1137.596 kb on - strand, within EX28DRAFT_1123at 1137.688 kb on + strand, within EX28DRAFT_1123at 1137.893 kb on + strand, within EX28DRAFT_1123at 1137.894 kb on - strand, within EX28DRAFT_1123at 1137.928 kb on - strand, within EX28DRAFT_1123at 1137.928 kb on - strand, within EX28DRAFT_1123at 1138.006 kb on - strand, within EX28DRAFT_1123at 1138.382 kb on - strand, within EX28DRAFT_1123at 1138.382 kb on - strand, within EX28DRAFT_1123at 1138.382 kb on - strand, within EX28DRAFT_1123at 1138.450 kb on + strandat 1138.450 kb on + strandat 1138.450 kb on + strandat 1138.450 kb on + strandat 1138.450 kb on + strandat 1138.450 kb on + strandat 1138.451 kb on - strandat 1138.451 kb on - strandat 1138.451 kb on - strandat 1138.451 kb on - strandat 1138.452 kb on + strandat 1138.452 kb on + strandat 1138.452 kb on + strandat 1138.453 kb on - strandat 1138.512 kb on + strandat 1138.529 kb on - strandat 1138.696 kb on - strand, within EX28DRAFT_1124at 1138.730 kb on + strand, within EX28DRAFT_1124at 1138.731 kb on - strand, within EX28DRAFT_1124at 1138.859 kb on - strand, within EX28DRAFT_1124at 1138.887 kb on - strand, within EX28DRAFT_1124at 1138.952 kb on + strand, within EX28DRAFT_1124at 1138.989 kb on + strand, within EX28DRAFT_1124at 1138.993 kb on - strand, within EX28DRAFT_1124at 1139.040 kb on + strand, within EX28DRAFT_1124at 1139.040 kb on + strand, within EX28DRAFT_1124at 1139.040 kb on + strand, within EX28DRAFT_1124at 1139.041 kb on - strand, within EX28DRAFT_1124at 1139.041 kb on - strand, within EX28DRAFT_1124at 1139.041 kb on - strand, within EX28DRAFT_1124at 1139.041 kb on - strand, within EX28DRAFT_1124at 1139.172 kb on + strand, within EX28DRAFT_1124at 1139.172 kb on + strand, within EX28DRAFT_1124at 1139.174 kb on + strand, within EX28DRAFT_1124at 1139.174 kb on + strand, within EX28DRAFT_1124at 1139.175 kb on - strand, within EX28DRAFT_1124at 1139.175 kb on - strand, within EX28DRAFT_1124at 1139.175 kb on - strand, within EX28DRAFT_1124at 1139.175 kb on - strand, within EX28DRAFT_1124at 1139.262 kb on + strand, within EX28DRAFT_1124at 1139.503 kb on + strand, within EX28DRAFT_1124at 1139.504 kb on - strand, within EX28DRAFT_1124at 1139.504 kb on - strand, within EX28DRAFT_1124at 1139.701 kb on + strand, within EX28DRAFT_1124at 1139.701 kb on + strand, within EX28DRAFT_1124at 1139.702 kb on - strand, within EX28DRAFT_1124at 1139.702 kb on - strand, within EX28DRAFT_1124at 1139.702 kb on - strand, within EX28DRAFT_1124at 1139.900 kb on - strandat 1139.930 kb on - strandat 1139.956 kb on + strandat 1140.380 kb on - strand, within EX28DRAFT_1125at 1140.523 kb on + strand, within EX28DRAFT_1125at 1140.579 kb on + strand, within EX28DRAFT_1125at 1140.579 kb on + strand, within EX28DRAFT_1125at 1140.783 kb on + strand, within EX28DRAFT_1125at 1140.812 kb on - strand, within EX28DRAFT_1125at 1140.812 kb on - strand, within EX28DRAFT_1125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
1,137,566 - EX28DRAFT_1123 0.30 -4.3
1,137,595 + EX28DRAFT_1123 0.32 -2.6
1,137,595 + EX28DRAFT_1123 0.32 -2.8
1,137,596 - EX28DRAFT_1123 0.32 -3.1
1,137,688 + EX28DRAFT_1123 0.39 -3.7
1,137,893 + EX28DRAFT_1123 0.53 -1.6
1,137,894 - EX28DRAFT_1123 0.54 -4.7
1,137,928 - EX28DRAFT_1123 0.56 +0.1
1,137,928 - EX28DRAFT_1123 0.56 -4.9
1,138,006 - EX28DRAFT_1123 0.62 -4.0
1,138,382 - EX28DRAFT_1123 0.89 -4.1
1,138,382 - EX28DRAFT_1123 0.89 -4.7
1,138,382 - EX28DRAFT_1123 0.89 -1.9
1,138,450 + -5.5
1,138,450 + -1.3
1,138,450 + -4.9
1,138,450 + -4.4
1,138,450 + -0.4
1,138,450 + -2.2
1,138,451 - -4.1
1,138,451 - -2.7
1,138,451 - -3.7
1,138,451 - -3.8
1,138,452 + -4.4
1,138,452 + -3.7
1,138,452 + -1.2
1,138,453 - -2.2
1,138,512 + -2.8
1,138,529 - -4.2
1,138,696 - EX28DRAFT_1124 0.12 -3.0
1,138,730 + EX28DRAFT_1124 0.14 -3.9
1,138,731 - EX28DRAFT_1124 0.14 -1.3
1,138,859 - EX28DRAFT_1124 0.23 -1.4
1,138,887 - EX28DRAFT_1124 0.25 -3.2
1,138,952 + EX28DRAFT_1124 0.30 -0.1
1,138,989 + EX28DRAFT_1124 0.33 -3.1
1,138,993 - EX28DRAFT_1124 0.33 -2.5
1,139,040 + EX28DRAFT_1124 0.36 -1.0
1,139,040 + EX28DRAFT_1124 0.36 -2.2
1,139,040 + EX28DRAFT_1124 0.36 -5.1
1,139,041 - EX28DRAFT_1124 0.36 -3.2
1,139,041 - EX28DRAFT_1124 0.36 -3.4
1,139,041 - EX28DRAFT_1124 0.36 -3.8
1,139,041 - EX28DRAFT_1124 0.36 -2.7
1,139,172 + EX28DRAFT_1124 0.46 -1.1
1,139,172 + EX28DRAFT_1124 0.46 -2.3
1,139,174 + EX28DRAFT_1124 0.46 -4.7
1,139,174 + EX28DRAFT_1124 0.46 -3.6
1,139,175 - EX28DRAFT_1124 0.46 -2.8
1,139,175 - EX28DRAFT_1124 0.46 -0.8
1,139,175 - EX28DRAFT_1124 0.46 -2.8
1,139,175 - EX28DRAFT_1124 0.46 -3.7
1,139,262 + EX28DRAFT_1124 0.52 -3.0
1,139,503 + EX28DRAFT_1124 0.69 -2.0
1,139,504 - EX28DRAFT_1124 0.69 -4.9
1,139,504 - EX28DRAFT_1124 0.69 -1.3
1,139,701 + EX28DRAFT_1124 0.83 -2.9
1,139,701 + EX28DRAFT_1124 0.83 -4.2
1,139,702 - EX28DRAFT_1124 0.83 -2.0
1,139,702 - EX28DRAFT_1124 0.83 -2.6
1,139,702 - EX28DRAFT_1124 0.83 -3.3
1,139,900 - -0.8
1,139,930 - -0.1
1,139,956 + +1.5
1,140,380 - EX28DRAFT_1125 0.41 +2.4
1,140,523 + EX28DRAFT_1125 0.55 +2.5
1,140,579 + EX28DRAFT_1125 0.60 +2.2
1,140,579 + EX28DRAFT_1125 0.60 +2.6
1,140,783 + EX28DRAFT_1125 0.80 +2.3
1,140,812 - EX28DRAFT_1125 0.83 +2.4
1,140,812 - EX28DRAFT_1125 0.83 +2.7

Or see this region's nucleotide sequence