Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1122

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1121 and EX28DRAFT_1122 are separated by 173 nucleotidesEX28DRAFT_1122 and EX28DRAFT_1123 are separated by 66 nucleotides EX28DRAFT_1121: EX28DRAFT_1121 - Sugar kinases, ribokinase family, at 1,134,512 to 1,135,402 _1121 EX28DRAFT_1122: EX28DRAFT_1122 - Maltoporin (phage lambda and maltose receptor), at 1,135,576 to 1,137,093 _1122 EX28DRAFT_1123: EX28DRAFT_1123 - PTS system, sucrose-specific IIBC component, at 1,137,160 to 1,138,530 _1123 Position (kb) 1135 1136 1137 1138Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1134.727 kb on + strand, within EX28DRAFT_1121at 1134.727 kb on + strand, within EX28DRAFT_1121at 1134.806 kb on - strand, within EX28DRAFT_1121at 1135.401 kb on - strandat 1135.511 kb on - strandat 1135.561 kb on + strandat 1135.627 kb on - strandat 1136.084 kb on - strand, within EX28DRAFT_1122at 1136.084 kb on - strand, within EX28DRAFT_1122at 1136.374 kb on + strand, within EX28DRAFT_1122at 1136.374 kb on + strand, within EX28DRAFT_1122at 1136.375 kb on - strand, within EX28DRAFT_1122at 1136.375 kb on - strand, within EX28DRAFT_1122at 1136.377 kb on - strand, within EX28DRAFT_1122at 1136.539 kb on + strand, within EX28DRAFT_1122at 1136.540 kb on - strand, within EX28DRAFT_1122at 1136.728 kb on - strand, within EX28DRAFT_1122at 1136.737 kb on + strand, within EX28DRAFT_1122at 1136.738 kb on - strand, within EX28DRAFT_1122at 1136.738 kb on - strand, within EX28DRAFT_1122at 1136.756 kb on - strand, within EX28DRAFT_1122at 1136.756 kb on - strand, within EX28DRAFT_1122at 1136.831 kb on - strand, within EX28DRAFT_1122at 1136.837 kb on - strand, within EX28DRAFT_1122at 1136.837 kb on - strand, within EX28DRAFT_1122at 1136.837 kb on - strand, within EX28DRAFT_1122at 1136.837 kb on - strand, within EX28DRAFT_1122at 1137.135 kb on - strandat 1137.135 kb on - strandat 1137.154 kb on + strandat 1137.155 kb on + strandat 1137.155 kb on + strandat 1137.155 kb on + strandat 1137.156 kb on - strandat 1137.156 kb on - strandat 1137.159 kb on + strandat 1137.160 kb on - strandat 1137.379 kb on + strand, within EX28DRAFT_1123at 1137.566 kb on - strand, within EX28DRAFT_1123at 1137.595 kb on + strand, within EX28DRAFT_1123at 1137.595 kb on + strand, within EX28DRAFT_1123at 1137.596 kb on - strand, within EX28DRAFT_1123at 1137.688 kb on + strand, within EX28DRAFT_1123at 1137.893 kb on + strand, within EX28DRAFT_1123at 1137.894 kb on - strand, within EX28DRAFT_1123at 1137.928 kb on - strand, within EX28DRAFT_1123at 1137.928 kb on - strand, within EX28DRAFT_1123at 1138.006 kb on - strand, within EX28DRAFT_1123

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,134,727 + EX28DRAFT_1121 0.24 +0.3
1,134,727 + EX28DRAFT_1121 0.24 +0.4
1,134,806 - EX28DRAFT_1121 0.33 -2.1
1,135,401 - +1.3
1,135,511 - -1.5
1,135,561 + -1.7
1,135,627 - +0.3
1,136,084 - EX28DRAFT_1122 0.33 -4.8
1,136,084 - EX28DRAFT_1122 0.33 -2.3
1,136,374 + EX28DRAFT_1122 0.53 -3.6
1,136,374 + EX28DRAFT_1122 0.53 -2.5
1,136,375 - EX28DRAFT_1122 0.53 -3.4
1,136,375 - EX28DRAFT_1122 0.53 -3.5
1,136,377 - EX28DRAFT_1122 0.53 -4.2
1,136,539 + EX28DRAFT_1122 0.63 -1.1
1,136,540 - EX28DRAFT_1122 0.64 -4.9
1,136,728 - EX28DRAFT_1122 0.76 -1.5
1,136,737 + EX28DRAFT_1122 0.76 -1.2
1,136,738 - EX28DRAFT_1122 0.77 -3.4
1,136,738 - EX28DRAFT_1122 0.77 -5.8
1,136,756 - EX28DRAFT_1122 0.78 -2.6
1,136,756 - EX28DRAFT_1122 0.78 -3.5
1,136,831 - EX28DRAFT_1122 0.83 -4.2
1,136,837 - EX28DRAFT_1122 0.83 -2.6
1,136,837 - EX28DRAFT_1122 0.83 -4.7
1,136,837 - EX28DRAFT_1122 0.83 -5.3
1,136,837 - EX28DRAFT_1122 0.83 -4.4
1,137,135 - -4.2
1,137,135 - -4.5
1,137,154 + -2.5
1,137,155 + -2.3
1,137,155 + -4.2
1,137,155 + -2.7
1,137,156 - -4.1
1,137,156 - -3.9
1,137,159 + -2.9
1,137,160 - -3.2
1,137,379 + EX28DRAFT_1123 0.16 -5.3
1,137,566 - EX28DRAFT_1123 0.30 -4.3
1,137,595 + EX28DRAFT_1123 0.32 -2.6
1,137,595 + EX28DRAFT_1123 0.32 -2.8
1,137,596 - EX28DRAFT_1123 0.32 -3.1
1,137,688 + EX28DRAFT_1123 0.39 -3.7
1,137,893 + EX28DRAFT_1123 0.53 -1.6
1,137,894 - EX28DRAFT_1123 0.54 -4.7
1,137,928 - EX28DRAFT_1123 0.56 +0.1
1,137,928 - EX28DRAFT_1123 0.56 -4.9
1,138,006 - EX28DRAFT_1123 0.62 -4.0

Or see this region's nucleotide sequence