Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1053

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1052 and EX28DRAFT_1053 are separated by 14 nucleotidesEX28DRAFT_1053 and EX28DRAFT_1054 are separated by 9 nucleotidesEX28DRAFT_1054 and EX28DRAFT_1055 are separated by 9 nucleotides EX28DRAFT_1052: EX28DRAFT_1052 - FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family, at 1,063,801 to 1,065,117 _1052 EX28DRAFT_1053: EX28DRAFT_1053 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,065,132 to 1,066,064 _1053 EX28DRAFT_1054: EX28DRAFT_1054 - Acetyltransferase (GNAT) family, at 1,066,074 to 1,066,583 _1054 EX28DRAFT_1055: EX28DRAFT_1055 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,066,593 to 1,067,519 _1055 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -1 0 1at 1064.263 kb on + strand, within EX28DRAFT_1052at 1064.323 kb on - strand, within EX28DRAFT_1052at 1064.572 kb on - strand, within EX28DRAFT_1052at 1064.595 kb on - strand, within EX28DRAFT_1052at 1064.686 kb on - strand, within EX28DRAFT_1052at 1064.686 kb on - strand, within EX28DRAFT_1052at 1064.702 kb on - strand, within EX28DRAFT_1052at 1064.941 kb on + strand, within EX28DRAFT_1052at 1064.942 kb on - strand, within EX28DRAFT_1052at 1065.115 kb on + strandat 1065.149 kb on + strandat 1065.204 kb on - strandat 1065.249 kb on - strand, within EX28DRAFT_1053at 1065.499 kb on - strand, within EX28DRAFT_1053at 1065.499 kb on - strand, within EX28DRAFT_1053at 1065.499 kb on - strand, within EX28DRAFT_1053at 1065.499 kb on - strand, within EX28DRAFT_1053at 1065.802 kb on - strand, within EX28DRAFT_1053at 1066.023 kb on - strandat 1066.150 kb on - strand, within EX28DRAFT_1054at 1066.150 kb on - strand, within EX28DRAFT_1054at 1066.150 kb on - strand, within EX28DRAFT_1054at 1066.170 kb on + strand, within EX28DRAFT_1054at 1066.171 kb on - strand, within EX28DRAFT_1054at 1066.209 kb on + strand, within EX28DRAFT_1054at 1066.209 kb on + strand, within EX28DRAFT_1054at 1066.276 kb on - strand, within EX28DRAFT_1054at 1066.507 kb on - strand, within EX28DRAFT_1054at 1066.572 kb on - strandat 1066.935 kb on + strand, within EX28DRAFT_1055

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,064,263 + EX28DRAFT_1052 0.35 -0.0
1,064,323 - EX28DRAFT_1052 0.40 -0.2
1,064,572 - EX28DRAFT_1052 0.59 +0.1
1,064,595 - EX28DRAFT_1052 0.60 -1.2
1,064,686 - EX28DRAFT_1052 0.67 -0.2
1,064,686 - EX28DRAFT_1052 0.67 -0.2
1,064,702 - EX28DRAFT_1052 0.68 +0.0
1,064,941 + EX28DRAFT_1052 0.87 +1.6
1,064,942 - EX28DRAFT_1052 0.87 -0.3
1,065,115 + -0.0
1,065,149 + +1.1
1,065,204 - -0.4
1,065,249 - EX28DRAFT_1053 0.13 +0.0
1,065,499 - EX28DRAFT_1053 0.39 +1.3
1,065,499 - EX28DRAFT_1053 0.39 +0.8
1,065,499 - EX28DRAFT_1053 0.39 -0.5
1,065,499 - EX28DRAFT_1053 0.39 +0.7
1,065,802 - EX28DRAFT_1053 0.72 +1.2
1,066,023 - -0.4
1,066,150 - EX28DRAFT_1054 0.15 -0.2
1,066,150 - EX28DRAFT_1054 0.15 -1.0
1,066,150 - EX28DRAFT_1054 0.15 +0.7
1,066,170 + EX28DRAFT_1054 0.19 +0.7
1,066,171 - EX28DRAFT_1054 0.19 +0.3
1,066,209 + EX28DRAFT_1054 0.26 -0.7
1,066,209 + EX28DRAFT_1054 0.26 +0.2
1,066,276 - EX28DRAFT_1054 0.40 -0.5
1,066,507 - EX28DRAFT_1054 0.85 -0.5
1,066,572 - +0.4
1,066,935 + EX28DRAFT_1055 0.37 -0.0

Or see this region's nucleotide sequence