Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1036 and EX28DRAFT_1037 are separated by 95 nucleotides EX28DRAFT_1037 and EX28DRAFT_1038 are separated by 3 nucleotides EX28DRAFT_1038 and EX28DRAFT_1039 overlap by 4 nucleotides EX28DRAFT_1039 and EX28DRAFT_1040 are separated by 148 nucleotides EX28DRAFT_1040 and EX28DRAFT_1041 are separated by 65 nucleotides
EX28DRAFT_1036: EX28DRAFT_1036 - ABC-type dipeptide transport system, periplasmic component, at 1,046,673 to 1,048,271
_1036
EX28DRAFT_1037: EX28DRAFT_1037 - Protein of unknown function (DUF2526), at 1,048,367 to 1,048,600
_1037
EX28DRAFT_1038: EX28DRAFT_1038 - Uncharacterized protein conserved in bacteria, at 1,048,604 to 1,049,053
_1038
EX28DRAFT_1039: EX28DRAFT_1039 - Sortase and related acyltransferases, at 1,049,050 to 1,049,568
_1039
EX28DRAFT_1040: EX28DRAFT_1040 - Cupin domain/Helix-turn-helix, at 1,049,717 to 1,050,292
_1040
EX28DRAFT_1041: EX28DRAFT_1041 - Putative NADP-dependent oxidoreductases, at 1,050,358 to 1,051,398
_1041
Position (kb) 1049
1050 Strain fitness (log2 ratio) -2
-1
0
1 at 1048.194 kb on + strand at 1048.194 kb on + strand at 1048.194 kb on + strand at 1048.195 kb on - strand at 1048.265 kb on + strand at 1048.265 kb on + strand at 1048.265 kb on + strand at 1048.266 kb on - strand at 1048.269 kb on + strand at 1048.269 kb on + strand at 1048.269 kb on + strand at 1048.270 kb on - strand at 1048.270 kb on - strand at 1048.272 kb on + strand at 1048.272 kb on + strand at 1048.306 kb on - strand at 1048.387 kb on + strand at 1048.490 kb on + strand, within EX28DRAFT_1037 at 1048.534 kb on + strand, within EX28DRAFT_1037 at 1048.910 kb on + strand, within EX28DRAFT_1038 at 1048.911 kb on - strand, within EX28DRAFT_1038 at 1048.911 kb on - strand, within EX28DRAFT_1038 at 1048.985 kb on + strand, within EX28DRAFT_1038 at 1049.009 kb on + strand at 1049.097 kb on + strand at 1049.496 kb on + strand, within EX28DRAFT_1039 at 1049.705 kb on + strand at 1049.705 kb on + strand at 1049.705 kb on + strand at 1049.706 kb on - strand at 1049.708 kb on + strand at 1049.708 kb on + strand at 1049.708 kb on + strand at 1049.708 kb on + strand at 1050.005 kb on + strand, within EX28DRAFT_1040 at 1050.005 kb on + strand, within EX28DRAFT_1040 at 1050.104 kb on + strand, within EX28DRAFT_1040 at 1050.124 kb on + strand, within EX28DRAFT_1040 at 1050.125 kb on - strand, within EX28DRAFT_1040 at 1050.257 kb on + strand at 1050.258 kb on - strand at 1050.258 kb on - strand at 1050.267 kb on + strand at 1050.268 kb on - strand at 1050.290 kb on + strand at 1050.291 kb on - strand at 1050.297 kb on - strand at 1050.514 kb on + strand, within EX28DRAFT_1041 at 1050.514 kb on + strand, within EX28DRAFT_1041 at 1050.515 kb on - strand, within EX28DRAFT_1041 at 1050.547 kb on + strand, within EX28DRAFT_1041 at 1050.547 kb on + strand, within EX28DRAFT_1041 at 1050.548 kb on - strand, within EX28DRAFT_1041 at 1050.548 kb on - strand, within EX28DRAFT_1041
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,048,194 + +0.4 1,048,194 + -0.3 1,048,194 + -0.8 1,048,195 - -0.7 1,048,265 + -0.1 1,048,265 + -1.1 1,048,265 + +0.3 1,048,266 - +0.2 1,048,269 + -0.7 1,048,269 + -0.0 1,048,269 + -0.4 1,048,270 - -0.2 1,048,270 - -0.3 1,048,272 + -1.2 1,048,272 + +0.2 1,048,306 - +0.5 1,048,387 + -0.1 1,048,490 + EX28DRAFT_1037 0.53 +0.6 1,048,534 + EX28DRAFT_1037 0.71 +0.4 1,048,910 + EX28DRAFT_1038 0.68 -0.7 1,048,911 - EX28DRAFT_1038 0.68 +0.4 1,048,911 - EX28DRAFT_1038 0.68 +0.2 1,048,985 + EX28DRAFT_1038 0.85 +1.4 1,049,009 + +0.4 1,049,097 + +0.2 1,049,496 + EX28DRAFT_1039 0.86 -0.9 1,049,705 + +0.0 1,049,705 + -0.1 1,049,705 + +0.9 1,049,706 - -0.1 1,049,708 + +0.3 1,049,708 + +0.4 1,049,708 + -0.2 1,049,708 + -0.7 1,050,005 + EX28DRAFT_1040 0.50 -0.2 1,050,005 + EX28DRAFT_1040 0.50 -0.5 1,050,104 + EX28DRAFT_1040 0.67 -1.1 1,050,124 + EX28DRAFT_1040 0.71 -0.6 1,050,125 - EX28DRAFT_1040 0.71 +0.4 1,050,257 + -1.8 1,050,258 - -0.6 1,050,258 - +0.0 1,050,267 + -0.3 1,050,268 - -0.5 1,050,290 + -0.4 1,050,291 - +0.8 1,050,297 - -1.4 1,050,514 + EX28DRAFT_1041 0.15 +1.3 1,050,514 + EX28DRAFT_1041 0.15 -0.1 1,050,515 - EX28DRAFT_1041 0.15 +0.0 1,050,547 + EX28DRAFT_1041 0.18 +0.9 1,050,547 + EX28DRAFT_1041 0.18 -0.4 1,050,548 - EX28DRAFT_1041 0.18 -0.3 1,050,548 - EX28DRAFT_1041 0.18 +0.4
Or see this region's nucleotide sequence