Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0975 and EX28DRAFT_0976 are separated by 166 nucleotides EX28DRAFT_0976 and EX28DRAFT_0977 are separated by 49 nucleotides EX28DRAFT_0977 and EX28DRAFT_0978 overlap by 1 nucleotides EX28DRAFT_0978 and EX28DRAFT_0979 are separated by 12 nucleotides
EX28DRAFT_0975: EX28DRAFT_0975 - psp operon transcriptional activator PspF, at 977,465 to 978,442
_0975
EX28DRAFT_0976: EX28DRAFT_0976 - phage shock protein A (PspA) family protein, at 978,609 to 979,277
_0976
EX28DRAFT_0977: EX28DRAFT_0977 - phage shock protein B, at 979,327 to 979,551
_0977
EX28DRAFT_0978: EX28DRAFT_0978 - phage shock protein C (PspC) family protein, at 979,551 to 979,910
_0978
EX28DRAFT_0979: EX28DRAFT_0979 - phage shock protein PspD, at 979,923 to 980,147
_0979
Position (kb) 978
979
980 Strain fitness (log2 ratio) -1
0
1 at 977.609 kb on + strand, within EX28DRAFT_0975 at 978.066 kb on + strand, within EX28DRAFT_0975 at 978.262 kb on + strand, within EX28DRAFT_0975 at 978.263 kb on - strand, within EX28DRAFT_0975 at 978.291 kb on + strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.595 kb on - strand at 978.743 kb on + strand, within EX28DRAFT_0976 at 978.854 kb on + strand, within EX28DRAFT_0976 at 979.130 kb on + strand, within EX28DRAFT_0976 at 979.278 kb on + strand at 979.278 kb on + strand at 979.310 kb on + strand at 979.310 kb on + strand at 979.311 kb on - strand at 979.322 kb on + strand at 979.402 kb on + strand, within EX28DRAFT_0977 at 979.704 kb on - strand, within EX28DRAFT_0978 at 979.719 kb on + strand, within EX28DRAFT_0978 at 979.719 kb on + strand, within EX28DRAFT_0978 at 979.719 kb on + strand, within EX28DRAFT_0978 at 979.720 kb on - strand, within EX28DRAFT_0978 at 979.720 kb on - strand, within EX28DRAFT_0978 at 979.720 kb on - strand, within EX28DRAFT_0978 at 979.861 kb on - strand, within EX28DRAFT_0978 at 979.909 kb on - strand at 979.957 kb on + strand, within EX28DRAFT_0979 at 980.134 kb on - strand at 980.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 977,609 + EX28DRAFT_0975 0.15 -0.0 978,066 + EX28DRAFT_0975 0.61 +0.0 978,262 + EX28DRAFT_0975 0.81 +0.9 978,263 - EX28DRAFT_0975 0.82 -1.0 978,291 + EX28DRAFT_0975 0.84 -0.2 978,292 - EX28DRAFT_0975 0.85 -0.1 978,292 - EX28DRAFT_0975 0.85 -0.2 978,595 - -0.6 978,743 + EX28DRAFT_0976 0.20 -1.5 978,854 + EX28DRAFT_0976 0.37 -1.2 979,130 + EX28DRAFT_0976 0.78 -0.1 979,278 + -0.0 979,278 + -0.1 979,310 + -1.3 979,310 + -0.3 979,311 - +0.0 979,322 + -0.6 979,402 + EX28DRAFT_0977 0.33 +0.5 979,704 - EX28DRAFT_0978 0.42 -0.2 979,719 + EX28DRAFT_0978 0.47 +0.4 979,719 + EX28DRAFT_0978 0.47 -0.0 979,719 + EX28DRAFT_0978 0.47 +0.5 979,720 - EX28DRAFT_0978 0.47 -0.6 979,720 - EX28DRAFT_0978 0.47 +0.6 979,720 - EX28DRAFT_0978 0.47 -0.4 979,861 - EX28DRAFT_0978 0.86 +0.0 979,909 - +0.5 979,957 + EX28DRAFT_0979 0.15 -0.6 980,134 - -1.3 980,137 + +0.7
Or see this region's nucleotide sequence