Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0970

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0969 and EX28DRAFT_0970 are separated by 162 nucleotidesEX28DRAFT_0970 and EX28DRAFT_0971 are separated by 1 nucleotidesEX28DRAFT_0971 and EX28DRAFT_0972 overlap by 1 nucleotides EX28DRAFT_0969: EX28DRAFT_0969 - TupA-like ATPgrasp, at 970,993 to 971,934 _0969 EX28DRAFT_0970: EX28DRAFT_0970 - ABC-type antimicrobial peptide transport system, ATPase component, at 972,097 to 972,903 _0970 EX28DRAFT_0971: EX28DRAFT_0971 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 972,905 to 973,897 _0971 EX28DRAFT_0972: EX28DRAFT_0972 - ABC-type antimicrobial peptide transport system, permease component, at 973,897 to 974,787 _0972 Position (kb) 972 973Strain fitness (log2 ratio) -2 -1 0 1 2at 971.125 kb on + strand, within EX28DRAFT_0969at 971.138 kb on + strand, within EX28DRAFT_0969at 971.160 kb on + strand, within EX28DRAFT_0969at 971.160 kb on + strand, within EX28DRAFT_0969at 971.161 kb on - strand, within EX28DRAFT_0969at 971.284 kb on + strand, within EX28DRAFT_0969at 971.284 kb on + strand, within EX28DRAFT_0969at 971.285 kb on - strand, within EX28DRAFT_0969at 971.285 kb on - strand, within EX28DRAFT_0969at 971.304 kb on - strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.355 kb on - strand, within EX28DRAFT_0969at 971.435 kb on + strand, within EX28DRAFT_0969at 971.436 kb on - strand, within EX28DRAFT_0969at 971.449 kb on + strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.460 kb on + strand, within EX28DRAFT_0969at 971.566 kb on - strand, within EX28DRAFT_0969at 971.569 kb on + strand, within EX28DRAFT_0969at 971.569 kb on + strand, within EX28DRAFT_0969at 971.572 kb on + strand, within EX28DRAFT_0969at 971.665 kb on + strand, within EX28DRAFT_0969at 971.748 kb on + strand, within EX28DRAFT_0969at 971.777 kb on - strand, within EX28DRAFT_0969at 971.842 kb on + strandat 972.025 kb on - strandat 972.288 kb on - strand, within EX28DRAFT_0970at 972.498 kb on + strand, within EX28DRAFT_0970at 972.798 kb on + strand, within EX28DRAFT_0970

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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971,125 + EX28DRAFT_0969 0.14 +0.9
971,138 + EX28DRAFT_0969 0.15 +0.2
971,160 + EX28DRAFT_0969 0.18 -0.2
971,160 + EX28DRAFT_0969 0.18 +1.8
971,161 - EX28DRAFT_0969 0.18 -0.5
971,284 + EX28DRAFT_0969 0.31 -1.0
971,284 + EX28DRAFT_0969 0.31 +0.8
971,285 - EX28DRAFT_0969 0.31 +0.5
971,285 - EX28DRAFT_0969 0.31 +0.2
971,304 - EX28DRAFT_0969 0.33 -0.5
971,350 + EX28DRAFT_0969 0.38 -0.4
971,350 + EX28DRAFT_0969 0.38 +0.2
971,350 + EX28DRAFT_0969 0.38 -0.1
971,351 - EX28DRAFT_0969 0.38 +0.7
971,351 - EX28DRAFT_0969 0.38 -0.0
971,351 - EX28DRAFT_0969 0.38 -0.4
971,351 - EX28DRAFT_0969 0.38 -0.5
971,355 - EX28DRAFT_0969 0.38 +0.7
971,435 + EX28DRAFT_0969 0.47 +0.8
971,436 - EX28DRAFT_0969 0.47 -0.5
971,449 + EX28DRAFT_0969 0.48 -0.7
971,450 - EX28DRAFT_0969 0.49 -0.3
971,450 - EX28DRAFT_0969 0.49 +0.1
971,450 - EX28DRAFT_0969 0.49 -0.3
971,460 + EX28DRAFT_0969 0.50 +0.4
971,566 - EX28DRAFT_0969 0.61 +0.3
971,569 + EX28DRAFT_0969 0.61 -0.8
971,569 + EX28DRAFT_0969 0.61 -1.2
971,572 + EX28DRAFT_0969 0.61 -0.2
971,665 + EX28DRAFT_0969 0.71 -0.6
971,748 + EX28DRAFT_0969 0.80 +0.4
971,777 - EX28DRAFT_0969 0.83 -0.7
971,842 + -0.8
972,025 - -1.2
972,288 - EX28DRAFT_0970 0.24 -1.5
972,498 + EX28DRAFT_0970 0.50 -2.7
972,798 + EX28DRAFT_0970 0.87 -1.2

Or see this region's nucleotide sequence