Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0927

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0925 and EX28DRAFT_0926 are separated by 25 nucleotidesEX28DRAFT_0926 and EX28DRAFT_0927 are separated by 282 nucleotidesEX28DRAFT_0927 and EX28DRAFT_0928 are separated by 46 nucleotidesEX28DRAFT_0928 and EX28DRAFT_0929 are separated by 122 nucleotidesEX28DRAFT_0929 and EX28DRAFT_0930 overlap by 4 nucleotides EX28DRAFT_0925: EX28DRAFT_0925 - Uncharacterised protein family (UPF0259), at 925,252 to 925,995 _0925 EX28DRAFT_0926: EX28DRAFT_0926 - Predicted Fe-S-cluster oxidoreductase, at 926,021 to 926,425 _0926 EX28DRAFT_0927: EX28DRAFT_0927 - Outer membrane protein W, at 926,708 to 927,340 _0927 EX28DRAFT_0928: EX28DRAFT_0928 - hypothetical protein, at 927,387 to 927,728 _0928 EX28DRAFT_0929: EX28DRAFT_0929 - Predicted redox protein, regulator of disulfide bond formation, at 927,851 to 928,084 _0929 EX28DRAFT_0930: EX28DRAFT_0930 - Predicted transporter component, at 928,081 to 929,292 _0930 Position (kb) 926 927 928Strain fitness (log2 ratio) -2 -1 0 1at 925.909 kb on + strand, within EX28DRAFT_0925at 925.910 kb on - strand, within EX28DRAFT_0925at 925.910 kb on - strand, within EX28DRAFT_0925at 925.910 kb on - strand, within EX28DRAFT_0925at 925.910 kb on - strand, within EX28DRAFT_0925at 925.910 kb on - strand, within EX28DRAFT_0925at 925.990 kb on - strandat 926.090 kb on - strand, within EX28DRAFT_0926at 926.417 kb on - strandat 926.479 kb on - strandat 926.650 kb on - strandat 926.650 kb on - strandat 926.653 kb on - strandat 926.666 kb on + strandat 926.736 kb on + strandat 926.736 kb on + strandat 926.739 kb on + strandat 926.788 kb on + strand, within EX28DRAFT_0927at 926.807 kb on - strand, within EX28DRAFT_0927at 926.857 kb on + strand, within EX28DRAFT_0927at 926.857 kb on + strand, within EX28DRAFT_0927at 926.857 kb on + strand, within EX28DRAFT_0927at 926.880 kb on + strand, within EX28DRAFT_0927at 926.897 kb on + strand, within EX28DRAFT_0927at 926.897 kb on + strand, within EX28DRAFT_0927at 926.897 kb on + strand, within EX28DRAFT_0927at 926.897 kb on + strand, within EX28DRAFT_0927at 926.898 kb on - strand, within EX28DRAFT_0927at 926.898 kb on - strand, within EX28DRAFT_0927at 926.900 kb on - strand, within EX28DRAFT_0927at 927.059 kb on + strand, within EX28DRAFT_0927at 927.059 kb on + strand, within EX28DRAFT_0927at 927.061 kb on + strand, within EX28DRAFT_0927at 927.231 kb on - strand, within EX28DRAFT_0927at 927.252 kb on + strand, within EX28DRAFT_0927at 927.252 kb on + strand, within EX28DRAFT_0927at 927.289 kb on + strandat 927.290 kb on - strandat 927.309 kb on + strandat 927.309 kb on + strandat 927.313 kb on + strandat 927.313 kb on + strandat 927.314 kb on - strandat 927.314 kb on - strandat 927.454 kb on + strand, within EX28DRAFT_0928at 927.455 kb on - strand, within EX28DRAFT_0928at 927.455 kb on - strand, within EX28DRAFT_0928at 927.455 kb on - strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.457 kb on - strand, within EX28DRAFT_0928at 927.457 kb on - strand, within EX28DRAFT_0928at 927.461 kb on - strand, within EX28DRAFT_0928at 927.461 kb on - strand, within EX28DRAFT_0928at 927.461 kb on - strand, within EX28DRAFT_0928at 927.595 kb on + strand, within EX28DRAFT_0928at 927.638 kb on + strand, within EX28DRAFT_0928at 927.639 kb on - strand, within EX28DRAFT_0928at 927.721 kb on + strandat 927.722 kb on - strandat 927.770 kb on - strandat 928.111 kb on - strandat 928.182 kb on - strandat 928.182 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
925,909 + EX28DRAFT_0925 0.88 +0.8
925,910 - EX28DRAFT_0925 0.88 +0.5
925,910 - EX28DRAFT_0925 0.88 +0.5
925,910 - EX28DRAFT_0925 0.88 +0.4
925,910 - EX28DRAFT_0925 0.88 +0.7
925,910 - EX28DRAFT_0925 0.88 +0.7
925,990 - +0.8
926,090 - EX28DRAFT_0926 0.17 +0.2
926,417 - -0.7
926,479 - +0.6
926,650 - +0.6
926,650 - -2.0
926,653 - -0.3
926,666 + -0.2
926,736 + +0.1
926,736 + -0.2
926,739 + +0.0
926,788 + EX28DRAFT_0927 0.13 +1.3
926,807 - EX28DRAFT_0927 0.16 +0.9
926,857 + EX28DRAFT_0927 0.24 -0.0
926,857 + EX28DRAFT_0927 0.24 -0.3
926,857 + EX28DRAFT_0927 0.24 -0.0
926,880 + EX28DRAFT_0927 0.27 -1.5
926,897 + EX28DRAFT_0927 0.30 -0.2
926,897 + EX28DRAFT_0927 0.30 -0.0
926,897 + EX28DRAFT_0927 0.30 -0.1
926,897 + EX28DRAFT_0927 0.30 -0.1
926,898 - EX28DRAFT_0927 0.30 -0.2
926,898 - EX28DRAFT_0927 0.30 -0.4
926,900 - EX28DRAFT_0927 0.30 -0.8
927,059 + EX28DRAFT_0927 0.55 -0.4
927,059 + EX28DRAFT_0927 0.55 +0.2
927,061 + EX28DRAFT_0927 0.56 -1.3
927,231 - EX28DRAFT_0927 0.83 -0.5
927,252 + EX28DRAFT_0927 0.86 +0.4
927,252 + EX28DRAFT_0927 0.86 +0.2
927,289 + +0.2
927,290 - -0.2
927,309 + +0.6
927,309 + +0.7
927,313 + +0.1
927,313 + -0.1
927,314 - +0.8
927,314 - -0.6
927,454 + EX28DRAFT_0928 0.20 +0.0
927,455 - EX28DRAFT_0928 0.20 +0.9
927,455 - EX28DRAFT_0928 0.20 +0.1
927,455 - EX28DRAFT_0928 0.20 -0.2
927,456 + EX28DRAFT_0928 0.20 +0.8
927,456 + EX28DRAFT_0928 0.20 -0.4
927,456 + EX28DRAFT_0928 0.20 +0.1
927,456 + EX28DRAFT_0928 0.20 +0.1
927,456 + EX28DRAFT_0928 0.20 +0.3
927,457 - EX28DRAFT_0928 0.20 +0.2
927,457 - EX28DRAFT_0928 0.20 -0.5
927,461 - EX28DRAFT_0928 0.22 -0.2
927,461 - EX28DRAFT_0928 0.22 +0.5
927,461 - EX28DRAFT_0928 0.22 +0.1
927,595 + EX28DRAFT_0928 0.61 -0.3
927,638 + EX28DRAFT_0928 0.73 -0.2
927,639 - EX28DRAFT_0928 0.74 -0.3
927,721 + -2.1
927,722 - -0.3
927,770 - -0.2
928,111 - +0.3
928,182 - +0.7
928,182 - +0.3

Or see this region's nucleotide sequence