Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0908

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0906 and EX28DRAFT_0907 are separated by 10 nucleotidesEX28DRAFT_0907 and EX28DRAFT_0908 overlap by 8 nucleotidesEX28DRAFT_0908 and EX28DRAFT_0909 are separated by 7 nucleotides EX28DRAFT_0906: EX28DRAFT_0906 - Phage baseplate assembly protein W, at 909,432 to 909,776 _0906 EX28DRAFT_0907: EX28DRAFT_0907 - Phage-related baseplate assembly protein, at 909,787 to 910,695 _0907 EX28DRAFT_0908: EX28DRAFT_0908 - phage tail protein, P2 protein I family, at 910,688 to 911,221 _0908 EX28DRAFT_0909: EX28DRAFT_0909 - Phage-related tail fibre protein, at 911,229 to 913,094 _0909 Position (kb) 910 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 909.713 kb on + strand, within EX28DRAFT_0906at 909.713 kb on + strand, within EX28DRAFT_0906at 909.714 kb on - strand, within EX28DRAFT_0906at 909.805 kb on - strandat 909.844 kb on + strandat 909.845 kb on - strandat 909.845 kb on - strandat 909.913 kb on - strand, within EX28DRAFT_0907at 909.956 kb on + strand, within EX28DRAFT_0907at 909.957 kb on - strand, within EX28DRAFT_0907at 910.034 kb on - strand, within EX28DRAFT_0907at 910.062 kb on - strand, within EX28DRAFT_0907at 910.429 kb on + strand, within EX28DRAFT_0907at 910.432 kb on - strand, within EX28DRAFT_0907at 910.513 kb on + strand, within EX28DRAFT_0907at 910.513 kb on + strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.974 kb on - strand, within EX28DRAFT_0908at 911.076 kb on - strand, within EX28DRAFT_0908at 911.141 kb on - strand, within EX28DRAFT_0908at 911.184 kb on - strandat 911.216 kb on - strandat 911.236 kb on + strandat 911.237 kb on - strandat 911.243 kb on + strandat 911.274 kb on - strandat 911.446 kb on - strand, within EX28DRAFT_0909at 911.511 kb on + strand, within EX28DRAFT_0909at 911.511 kb on + strand, within EX28DRAFT_0909at 911.606 kb on + strand, within EX28DRAFT_0909at 911.607 kb on - strand, within EX28DRAFT_0909at 911.620 kb on + strand, within EX28DRAFT_0909at 911.621 kb on - strand, within EX28DRAFT_0909at 911.682 kb on + strand, within EX28DRAFT_0909at 911.683 kb on - strand, within EX28DRAFT_0909at 911.693 kb on + strand, within EX28DRAFT_0909at 911.765 kb on - strand, within EX28DRAFT_0909at 911.820 kb on - strand, within EX28DRAFT_0909at 911.851 kb on - strand, within EX28DRAFT_0909at 911.851 kb on - strand, within EX28DRAFT_0909at 911.961 kb on + strand, within EX28DRAFT_0909at 911.961 kb on + strand, within EX28DRAFT_0909at 911.962 kb on - strand, within EX28DRAFT_0909at 911.982 kb on + strand, within EX28DRAFT_0909at 911.984 kb on + strand, within EX28DRAFT_0909at 912.032 kb on + strand, within EX28DRAFT_0909at 912.075 kb on - strand, within EX28DRAFT_0909

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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909,713 + EX28DRAFT_0906 0.81 -0.0
909,713 + EX28DRAFT_0906 0.81 -0.0
909,714 - EX28DRAFT_0906 0.82 -0.1
909,805 - -0.1
909,844 + -1.1
909,845 - -1.4
909,845 - +2.3
909,913 - EX28DRAFT_0907 0.14 +0.4
909,956 + EX28DRAFT_0907 0.19 +0.2
909,957 - EX28DRAFT_0907 0.19 -0.1
910,034 - EX28DRAFT_0907 0.27 +0.1
910,062 - EX28DRAFT_0907 0.30 -0.6
910,429 + EX28DRAFT_0907 0.71 -0.3
910,432 - EX28DRAFT_0907 0.71 +0.6
910,513 + EX28DRAFT_0907 0.80 +0.5
910,513 + EX28DRAFT_0907 0.80 -0.4
910,514 - EX28DRAFT_0907 0.80 -0.1
910,514 - EX28DRAFT_0907 0.80 +0.2
910,514 - EX28DRAFT_0907 0.80 -0.5
910,514 - EX28DRAFT_0907 0.80 -0.5
910,974 - EX28DRAFT_0908 0.54 -1.3
911,076 - EX28DRAFT_0908 0.73 +0.6
911,141 - EX28DRAFT_0908 0.85 +0.9
911,184 - -0.3
911,216 - -1.0
911,236 + -1.1
911,237 - -0.2
911,243 + -1.4
911,274 - -0.3
911,446 - EX28DRAFT_0909 0.12 -0.8
911,511 + EX28DRAFT_0909 0.15 +1.4
911,511 + EX28DRAFT_0909 0.15 -0.8
911,606 + EX28DRAFT_0909 0.20 -0.1
911,607 - EX28DRAFT_0909 0.20 +0.0
911,620 + EX28DRAFT_0909 0.21 +0.9
911,621 - EX28DRAFT_0909 0.21 +0.2
911,682 + EX28DRAFT_0909 0.24 +0.2
911,683 - EX28DRAFT_0909 0.24 -2.8
911,693 + EX28DRAFT_0909 0.25 -0.7
911,765 - EX28DRAFT_0909 0.29 -0.7
911,820 - EX28DRAFT_0909 0.32 +0.9
911,851 - EX28DRAFT_0909 0.33 +0.4
911,851 - EX28DRAFT_0909 0.33 +0.0
911,961 + EX28DRAFT_0909 0.39 +0.2
911,961 + EX28DRAFT_0909 0.39 +0.2
911,962 - EX28DRAFT_0909 0.39 -0.2
911,982 + EX28DRAFT_0909 0.40 -1.1
911,984 + EX28DRAFT_0909 0.40 -0.5
912,032 + EX28DRAFT_0909 0.43 -0.0
912,075 - EX28DRAFT_0909 0.45 -0.6

Or see this region's nucleotide sequence