Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0894 and EX28DRAFT_0895 are separated by 3 nucleotides EX28DRAFT_0895 and EX28DRAFT_0896 are separated by 99 nucleotides EX28DRAFT_0896 and EX28DRAFT_0897 overlap by 1 nucleotides EX28DRAFT_0897 and EX28DRAFT_0898 overlap by 10 nucleotides
EX28DRAFT_0894: EX28DRAFT_0894 - phage major capsid protein, P2 family, at 902,827 to 903,921
_0894
EX28DRAFT_0895: EX28DRAFT_0895 - Phage small terminase subunit, at 903,925 to 904,680
_0895
EX28DRAFT_0896: EX28DRAFT_0896 - Phage head completion protein (GPL), at 904,780 to 905,286
_0896
EX28DRAFT_0897: EX28DRAFT_0897 - P2-like prophage tail protein X, at 905,286 to 905,489
_0897
EX28DRAFT_0898: EX28DRAFT_0898 - holin, HP1 family, at 905,480 to 905,701
_0898
Position (kb) 903
904
905 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 903.123 kb on + strand, within EX28DRAFT_0894 at 903.124 kb on - strand, within EX28DRAFT_0894 at 903.127 kb on + strand, within EX28DRAFT_0894 at 903.402 kb on + strand, within EX28DRAFT_0894 at 903.559 kb on + strand, within EX28DRAFT_0894 at 903.560 kb on - strand, within EX28DRAFT_0894 at 903.560 kb on - strand, within EX28DRAFT_0894 at 903.664 kb on + strand, within EX28DRAFT_0894 at 903.720 kb on + strand, within EX28DRAFT_0894 at 903.803 kb on - strand, within EX28DRAFT_0894 at 903.920 kb on - strand at 904.117 kb on + strand, within EX28DRAFT_0895 at 904.118 kb on - strand, within EX28DRAFT_0895 at 904.252 kb on + strand, within EX28DRAFT_0895 at 904.292 kb on - strand, within EX28DRAFT_0895 at 904.508 kb on + strand, within EX28DRAFT_0895 at 904.795 kb on - strand at 904.839 kb on - strand, within EX28DRAFT_0896 at 905.098 kb on + strand, within EX28DRAFT_0896 at 905.137 kb on + strand, within EX28DRAFT_0896 at 905.295 kb on + strand at 905.296 kb on - strand at 905.432 kb on - strand, within EX28DRAFT_0897 at 905.479 kb on + strand at 905.480 kb on - strand at 905.480 kb on - strand at 905.492 kb on - strand at 905.544 kb on - strand, within EX28DRAFT_0898 at 905.580 kb on - strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.622 kb on - strand, within EX28DRAFT_0898 at 905.642 kb on + strand, within EX28DRAFT_0898 at 905.643 kb on - strand, within EX28DRAFT_0898
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 903,123 + EX28DRAFT_0894 0.27 -0.8 903,124 - EX28DRAFT_0894 0.27 -0.2 903,127 + EX28DRAFT_0894 0.27 -0.7 903,402 + EX28DRAFT_0894 0.53 -2.3 903,559 + EX28DRAFT_0894 0.67 -0.2 903,560 - EX28DRAFT_0894 0.67 -0.2 903,560 - EX28DRAFT_0894 0.67 +0.3 903,664 + EX28DRAFT_0894 0.76 -0.4 903,720 + EX28DRAFT_0894 0.82 -0.2 903,803 - EX28DRAFT_0894 0.89 -0.6 903,920 - -0.6 904,117 + EX28DRAFT_0895 0.25 -0.5 904,118 - EX28DRAFT_0895 0.26 +3.1 904,252 + EX28DRAFT_0895 0.43 +0.2 904,292 - EX28DRAFT_0895 0.49 +1.7 904,508 + EX28DRAFT_0895 0.77 -0.3 904,795 - -1.5 904,839 - EX28DRAFT_0896 0.12 +0.1 905,098 + EX28DRAFT_0896 0.63 -0.0 905,137 + EX28DRAFT_0896 0.70 -1.6 905,295 + -0.3 905,296 - +0.5 905,432 - EX28DRAFT_0897 0.72 +0.3 905,479 + +1.0 905,480 - +1.1 905,480 - -0.4 905,492 - -0.1 905,544 - EX28DRAFT_0898 0.29 -1.6 905,580 - EX28DRAFT_0898 0.45 -0.6 905,621 + EX28DRAFT_0898 0.64 +0.5 905,621 + EX28DRAFT_0898 0.64 +0.4 905,621 + EX28DRAFT_0898 0.64 -0.3 905,621 + EX28DRAFT_0898 0.64 +1.0 905,622 - EX28DRAFT_0898 0.64 -0.2 905,642 + EX28DRAFT_0898 0.73 -0.3 905,643 - EX28DRAFT_0898 0.73 -0.0
Or see this region's nucleotide sequence