Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0889 and EX28DRAFT_0890 overlap by 4 nucleotides EX28DRAFT_0890 and EX28DRAFT_0891 are separated by 97 nucleotides EX28DRAFT_0891 and EX28DRAFT_0892 are separated by 1 nucleotides
EX28DRAFT_0889: EX28DRAFT_0889 - hypothetical protein, at 897,097 to 898,164
_0889
EX28DRAFT_0890: EX28DRAFT_0890 - hypothetical protein, at 898,161 to 898,856
_0890
EX28DRAFT_0891: EX28DRAFT_0891 - phage portal protein, PBSX family, at 898,954 to 899,979
_0891
EX28DRAFT_0892: EX28DRAFT_0892 - Uncharacterized conserved protein, at 899,981 to 901,750
_0892
Position (kb) 898
899
900 Strain fitness (log2 ratio) -1
0
1 at 898.035 kb on - strand, within EX28DRAFT_0889 at 898.053 kb on - strand, within EX28DRAFT_0889 at 898.306 kb on + strand, within EX28DRAFT_0890 at 898.710 kb on + strand, within EX28DRAFT_0890 at 898.924 kb on - strand at 898.966 kb on + strand at 898.967 kb on - strand at 898.967 kb on - strand at 898.967 kb on - strand at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.355 kb on - strand, within EX28DRAFT_0891 at 899.388 kb on - strand, within EX28DRAFT_0891 at 899.390 kb on + strand, within EX28DRAFT_0891 at 899.390 kb on + strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.436 kb on + strand, within EX28DRAFT_0891 at 899.549 kb on + strand, within EX28DRAFT_0891 at 899.585 kb on + strand, within EX28DRAFT_0891 at 899.586 kb on - strand, within EX28DRAFT_0891 at 899.669 kb on + strand, within EX28DRAFT_0891 at 899.826 kb on - strand, within EX28DRAFT_0891 at 899.982 kb on + strand at 899.982 kb on + strand at 899.983 kb on - strand at 899.986 kb on + strand at 899.987 kb on - strand at 899.987 kb on - strand at 900.109 kb on - strand at 900.154 kb on + strand at 900.154 kb on + strand at 900.154 kb on + strand at 900.155 kb on - strand at 900.341 kb on - strand, within EX28DRAFT_0892 at 900.342 kb on + strand, within EX28DRAFT_0892 at 900.354 kb on + strand, within EX28DRAFT_0892 at 900.354 kb on + strand, within EX28DRAFT_0892 at 900.355 kb on - strand, within EX28DRAFT_0892 at 900.508 kb on - strand, within EX28DRAFT_0892 at 900.629 kb on - strand, within EX28DRAFT_0892 at 900.649 kb on + strand, within EX28DRAFT_0892 at 900.649 kb on + strand, within EX28DRAFT_0892 at 900.650 kb on - strand, within EX28DRAFT_0892 at 900.910 kb on - strand, within EX28DRAFT_0892
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 898,035 - EX28DRAFT_0889 0.88 +0.3 898,053 - EX28DRAFT_0889 0.90 -0.2 898,306 + EX28DRAFT_0890 0.21 -0.3 898,710 + EX28DRAFT_0890 0.79 -0.5 898,924 - +0.5 898,966 + +0.0 898,967 - -0.2 898,967 - -0.7 898,967 - -0.3 899,354 + EX28DRAFT_0891 0.39 +0.8 899,354 + EX28DRAFT_0891 0.39 +0.5 899,354 + EX28DRAFT_0891 0.39 +0.3 899,355 - EX28DRAFT_0891 0.39 +0.5 899,388 - EX28DRAFT_0891 0.42 +0.3 899,390 + EX28DRAFT_0891 0.42 -0.1 899,390 + EX28DRAFT_0891 0.42 +0.0 899,391 - EX28DRAFT_0891 0.43 -0.1 899,391 - EX28DRAFT_0891 0.43 -0.4 899,391 - EX28DRAFT_0891 0.43 +0.3 899,436 + EX28DRAFT_0891 0.47 -0.9 899,549 + EX28DRAFT_0891 0.58 -0.3 899,585 + EX28DRAFT_0891 0.62 +0.2 899,586 - EX28DRAFT_0891 0.62 -0.2 899,669 + EX28DRAFT_0891 0.70 +1.2 899,826 - EX28DRAFT_0891 0.85 +0.9 899,982 + -0.5 899,982 + -0.2 899,983 - -1.1 899,986 + -0.3 899,987 - +0.1 899,987 - +0.2 900,109 - -1.0 900,154 + +1.6 900,154 + +0.4 900,154 + -0.6 900,155 - +0.0 900,341 - EX28DRAFT_0892 0.20 +0.2 900,342 + EX28DRAFT_0892 0.20 -0.7 900,354 + EX28DRAFT_0892 0.21 -1.0 900,354 + EX28DRAFT_0892 0.21 +0.6 900,355 - EX28DRAFT_0892 0.21 -0.4 900,508 - EX28DRAFT_0892 0.30 +0.4 900,629 - EX28DRAFT_0892 0.37 +0.3 900,649 + EX28DRAFT_0892 0.38 +0.3 900,649 + EX28DRAFT_0892 0.38 +0.5 900,650 - EX28DRAFT_0892 0.38 -0.7 900,910 - EX28DRAFT_0892 0.52 +0.2
Or see this region's nucleotide sequence