Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0788

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0786 and EX28DRAFT_0787 are separated by 23 nucleotidesEX28DRAFT_0787 and EX28DRAFT_0788 are separated by 28 nucleotidesEX28DRAFT_0788 and EX28DRAFT_0789 are separated by 17 nucleotides EX28DRAFT_0786: EX28DRAFT_0786 - hypothetical protein, at 785,950 to 786,444 _0786 EX28DRAFT_0787: EX28DRAFT_0787 - type VI secretion lipoprotein, VC_A0113 family, at 786,468 to 786,971 _0787 EX28DRAFT_0788: EX28DRAFT_0788 - type VI secretion protein, VC_A0114 family, at 787,000 to 788,343 _0788 EX28DRAFT_0789: EX28DRAFT_0789 - type VI secretion system peptidoglycan-associated domain, at 788,361 to 789,599 _0789 Position (kb) 786 787 788 789Strain fitness (log2 ratio) -2 -1 0 1at 786.036 kb on + strand, within EX28DRAFT_0786at 786.036 kb on + strand, within EX28DRAFT_0786at 786.139 kb on + strand, within EX28DRAFT_0786at 786.140 kb on - strand, within EX28DRAFT_0786at 786.211 kb on + strand, within EX28DRAFT_0786at 786.211 kb on + strand, within EX28DRAFT_0786at 786.284 kb on - strand, within EX28DRAFT_0786at 786.337 kb on - strand, within EX28DRAFT_0786at 786.345 kb on + strand, within EX28DRAFT_0786at 786.346 kb on - strand, within EX28DRAFT_0786at 786.442 kb on + strandat 786.442 kb on + strandat 786.507 kb on + strandat 786.620 kb on + strand, within EX28DRAFT_0787at 786.621 kb on - strand, within EX28DRAFT_0787at 786.675 kb on + strand, within EX28DRAFT_0787at 786.676 kb on - strand, within EX28DRAFT_0787at 786.676 kb on - strand, within EX28DRAFT_0787at 786.799 kb on - strand, within EX28DRAFT_0787at 786.884 kb on + strand, within EX28DRAFT_0787at 786.884 kb on + strand, within EX28DRAFT_0787at 786.884 kb on + strand, within EX28DRAFT_0787at 786.885 kb on - strand, within EX28DRAFT_0787at 786.885 kb on - strand, within EX28DRAFT_0787at 786.888 kb on + strand, within EX28DRAFT_0787at 786.889 kb on - strand, within EX28DRAFT_0787at 787.075 kb on + strandat 787.076 kb on - strandat 787.110 kb on - strandat 787.120 kb on + strandat 787.121 kb on - strandat 787.121 kb on - strandat 787.121 kb on - strandat 787.121 kb on - strandat 787.189 kb on + strand, within EX28DRAFT_0788at 787.189 kb on + strand, within EX28DRAFT_0788at 787.190 kb on - strand, within EX28DRAFT_0788at 787.190 kb on - strand, within EX28DRAFT_0788at 787.525 kb on - strand, within EX28DRAFT_0788at 787.555 kb on + strand, within EX28DRAFT_0788at 787.555 kb on + strand, within EX28DRAFT_0788at 787.556 kb on - strand, within EX28DRAFT_0788at 787.556 kb on - strand, within EX28DRAFT_0788at 787.556 kb on - strand, within EX28DRAFT_0788at 787.695 kb on + strand, within EX28DRAFT_0788at 787.752 kb on - strand, within EX28DRAFT_0788at 787.864 kb on + strand, within EX28DRAFT_0788at 788.155 kb on - strand, within EX28DRAFT_0788at 788.213 kb on - strandat 788.257 kb on - strandat 788.342 kb on - strandat 788.344 kb on + strandat 788.345 kb on - strandat 788.345 kb on - strandat 788.357 kb on + strandat 788.360 kb on + strandat 788.360 kb on + strandat 788.360 kb on + strandat 788.361 kb on - strandat 788.503 kb on + strand, within EX28DRAFT_0789at 788.756 kb on + strand, within EX28DRAFT_0789at 788.781 kb on + strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 789.012 kb on + strand, within EX28DRAFT_0789at 789.024 kb on - strand, within EX28DRAFT_0789at 789.070 kb on - strand, within EX28DRAFT_0789at 789.070 kb on - strand, within EX28DRAFT_0789

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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786,036 + EX28DRAFT_0786 0.17 +0.7
786,036 + EX28DRAFT_0786 0.17 +0.4
786,139 + EX28DRAFT_0786 0.38 -1.1
786,140 - EX28DRAFT_0786 0.38 -0.1
786,211 + EX28DRAFT_0786 0.53 -0.2
786,211 + EX28DRAFT_0786 0.53 -0.5
786,284 - EX28DRAFT_0786 0.67 -0.2
786,337 - EX28DRAFT_0786 0.78 +1.2
786,345 + EX28DRAFT_0786 0.80 +0.1
786,346 - EX28DRAFT_0786 0.80 +0.0
786,442 + +0.4
786,442 + -0.4
786,507 + -0.5
786,620 + EX28DRAFT_0787 0.30 -0.3
786,621 - EX28DRAFT_0787 0.30 -0.1
786,675 + EX28DRAFT_0787 0.41 +1.0
786,676 - EX28DRAFT_0787 0.41 +0.4
786,676 - EX28DRAFT_0787 0.41 -0.3
786,799 - EX28DRAFT_0787 0.66 +0.0
786,884 + EX28DRAFT_0787 0.83 +0.4
786,884 + EX28DRAFT_0787 0.83 +0.2
786,884 + EX28DRAFT_0787 0.83 +1.2
786,885 - EX28DRAFT_0787 0.83 +0.2
786,885 - EX28DRAFT_0787 0.83 +0.5
786,888 + EX28DRAFT_0787 0.83 +0.1
786,889 - EX28DRAFT_0787 0.84 +0.5
787,075 + +0.1
787,076 - -0.1
787,110 - +0.4
787,120 + -0.1
787,121 - -0.5
787,121 - +0.2
787,121 - +0.4
787,121 - -0.6
787,189 + EX28DRAFT_0788 0.14 -0.2
787,189 + EX28DRAFT_0788 0.14 +0.9
787,190 - EX28DRAFT_0788 0.14 +0.7
787,190 - EX28DRAFT_0788 0.14 +0.1
787,525 - EX28DRAFT_0788 0.39 +0.8
787,555 + EX28DRAFT_0788 0.41 -0.2
787,555 + EX28DRAFT_0788 0.41 -0.2
787,556 - EX28DRAFT_0788 0.41 +1.3
787,556 - EX28DRAFT_0788 0.41 +0.0
787,556 - EX28DRAFT_0788 0.41 +0.8
787,695 + EX28DRAFT_0788 0.52 +0.7
787,752 - EX28DRAFT_0788 0.56 +1.1
787,864 + EX28DRAFT_0788 0.64 -0.2
788,155 - EX28DRAFT_0788 0.86 -2.0
788,213 - +0.3
788,257 - +0.3
788,342 - +1.0
788,344 + -0.2
788,345 - +0.2
788,345 - +0.0
788,357 + +0.5
788,360 + +1.1
788,360 + +0.6
788,360 + -0.2
788,361 - +0.1
788,503 + EX28DRAFT_0789 0.11 -0.1
788,756 + EX28DRAFT_0789 0.32 +0.2
788,781 + EX28DRAFT_0789 0.34 +0.4
788,782 - EX28DRAFT_0789 0.34 +0.3
788,782 - EX28DRAFT_0789 0.34 +0.2
788,782 - EX28DRAFT_0789 0.34 +0.3
788,782 - EX28DRAFT_0789 0.34 -0.1
789,012 + EX28DRAFT_0789 0.53 -0.1
789,024 - EX28DRAFT_0789 0.54 +0.8
789,070 - EX28DRAFT_0789 0.57 +0.5
789,070 - EX28DRAFT_0789 0.57 +0.8

Or see this region's nucleotide sequence