Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0703

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0702 and EX28DRAFT_0703 are separated by 140 nucleotidesEX28DRAFT_0703 and EX28DRAFT_0704 are separated by 356 nucleotides EX28DRAFT_0702: EX28DRAFT_0702 - pyruvate kinase, at 699,089 to 700,531 _0702 EX28DRAFT_0703: EX28DRAFT_0703 - transcriptional regulator, RpiR family, at 700,672 to 701,541 _0703 EX28DRAFT_0704: EX28DRAFT_0704 - glucose-6-phosphate 1-dehydrogenase, at 701,898 to 703,373 _0704 Position (kb) 700 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1at 699.916 kb on - strand, within EX28DRAFT_0702at 699.916 kb on - strand, within EX28DRAFT_0702at 699.957 kb on + strand, within EX28DRAFT_0702at 700.054 kb on + strand, within EX28DRAFT_0702at 700.190 kb on - strand, within EX28DRAFT_0702at 700.190 kb on - strand, within EX28DRAFT_0702at 700.190 kb on - strand, within EX28DRAFT_0702at 700.191 kb on + strand, within EX28DRAFT_0702at 700.386 kb on - strand, within EX28DRAFT_0702at 700.423 kb on + strandat 700.423 kb on + strandat 700.533 kb on + strandat 700.533 kb on + strandat 700.534 kb on - strandat 700.534 kb on - strandat 700.534 kb on - strandat 700.534 kb on - strandat 700.534 kb on - strandat 700.534 kb on - strandat 700.537 kb on - strandat 700.635 kb on - strandat 700.642 kb on - strandat 700.642 kb on - strandat 700.652 kb on + strandat 700.653 kb on - strandat 700.653 kb on - strandat 700.671 kb on - strandat 700.691 kb on - strandat 700.691 kb on - strandat 700.691 kb on - strandat 700.691 kb on - strandat 700.774 kb on + strand, within EX28DRAFT_0703at 700.775 kb on - strand, within EX28DRAFT_0703at 700.840 kb on - strand, within EX28DRAFT_0703at 700.842 kb on - strand, within EX28DRAFT_0703at 700.842 kb on - strand, within EX28DRAFT_0703at 700.842 kb on - strand, within EX28DRAFT_0703at 700.906 kb on - strand, within EX28DRAFT_0703at 700.966 kb on + strand, within EX28DRAFT_0703at 700.966 kb on + strand, within EX28DRAFT_0703at 700.967 kb on - strand, within EX28DRAFT_0703at 701.009 kb on - strand, within EX28DRAFT_0703at 701.032 kb on - strand, within EX28DRAFT_0703at 701.066 kb on + strand, within EX28DRAFT_0703at 701.170 kb on + strand, within EX28DRAFT_0703at 701.170 kb on + strand, within EX28DRAFT_0703at 701.262 kb on - strand, within EX28DRAFT_0703at 701.262 kb on - strand, within EX28DRAFT_0703at 701.262 kb on - strand, within EX28DRAFT_0703at 701.262 kb on - strand, within EX28DRAFT_0703at 701.292 kb on + strand, within EX28DRAFT_0703at 701.298 kb on + strand, within EX28DRAFT_0703at 701.303 kb on + strand, within EX28DRAFT_0703at 701.303 kb on + strand, within EX28DRAFT_0703at 701.303 kb on + strand, within EX28DRAFT_0703at 701.544 kb on + strandat 701.652 kb on - strandat 701.748 kb on + strandat 701.748 kb on + strandat 701.748 kb on + strandat 701.748 kb on + strandat 701.748 kb on + strandat 701.749 kb on - strandat 701.749 kb on - strandat 701.749 kb on - strandat 701.856 kb on + strandat 701.869 kb on + strandat 702.071 kb on + strand, within EX28DRAFT_0704

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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699,916 - EX28DRAFT_0702 0.57 -0.7
699,916 - EX28DRAFT_0702 0.57 +0.5
699,957 + EX28DRAFT_0702 0.60 +0.2
700,054 + EX28DRAFT_0702 0.67 -0.3
700,190 - EX28DRAFT_0702 0.76 +1.3
700,190 - EX28DRAFT_0702 0.76 -0.2
700,190 - EX28DRAFT_0702 0.76 -0.4
700,191 + EX28DRAFT_0702 0.76 +0.4
700,386 - EX28DRAFT_0702 0.90 +1.6
700,423 + +0.3
700,423 + +0.8
700,533 + -0.1
700,533 + +0.1
700,534 - -0.0
700,534 - +1.3
700,534 - +0.5
700,534 - +0.7
700,534 - -0.1
700,534 - +1.1
700,537 - +0.5
700,635 - +0.1
700,642 - +0.4
700,642 - -0.4
700,652 + +0.1
700,653 - +0.2
700,653 - -0.4
700,671 - +0.2
700,691 - -1.1
700,691 - -0.5
700,691 - +0.0
700,691 - +0.0
700,774 + EX28DRAFT_0703 0.12 +0.4
700,775 - EX28DRAFT_0703 0.12 -1.2
700,840 - EX28DRAFT_0703 0.19 -1.3
700,842 - EX28DRAFT_0703 0.20 -0.5
700,842 - EX28DRAFT_0703 0.20 -1.6
700,842 - EX28DRAFT_0703 0.20 -0.9
700,906 - EX28DRAFT_0703 0.27 -0.8
700,966 + EX28DRAFT_0703 0.34 +0.2
700,966 + EX28DRAFT_0703 0.34 -0.3
700,967 - EX28DRAFT_0703 0.34 -1.0
701,009 - EX28DRAFT_0703 0.39 +0.7
701,032 - EX28DRAFT_0703 0.41 -0.1
701,066 + EX28DRAFT_0703 0.45 -0.1
701,170 + EX28DRAFT_0703 0.57 +0.1
701,170 + EX28DRAFT_0703 0.57 +0.4
701,262 - EX28DRAFT_0703 0.68 -0.5
701,262 - EX28DRAFT_0703 0.68 -0.5
701,262 - EX28DRAFT_0703 0.68 -0.4
701,262 - EX28DRAFT_0703 0.68 -0.8
701,292 + EX28DRAFT_0703 0.71 +0.2
701,298 + EX28DRAFT_0703 0.72 +1.1
701,303 + EX28DRAFT_0703 0.73 +0.2
701,303 + EX28DRAFT_0703 0.73 -0.8
701,303 + EX28DRAFT_0703 0.73 +1.7
701,544 + +0.2
701,652 - -0.2
701,748 + -0.1
701,748 + +0.0
701,748 + +0.8
701,748 + -0.7
701,748 + +0.9
701,749 - -0.8
701,749 - +0.8
701,749 - +0.4
701,856 + -0.1
701,869 + +0.3
702,071 + EX28DRAFT_0704 0.12 -2.9

Or see this region's nucleotide sequence