Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0691 and EX28DRAFT_0692 are separated by 1 nucleotides EX28DRAFT_0692 and EX28DRAFT_0693 are separated by 27 nucleotides EX28DRAFT_0693 and EX28DRAFT_0694 are separated by 34 nucleotides EX28DRAFT_0694 and EX28DRAFT_0695 are separated by 80 nucleotides
EX28DRAFT_0691: EX28DRAFT_0691 - aspartyl-tRNA synthetase, bacterial type, at 688,741 to 690,513
_0691
EX28DRAFT_0692: EX28DRAFT_0692 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 690,515 to 690,958
_0692
EX28DRAFT_0693: EX28DRAFT_0693 - DNA-binding regulatory protein, YebC/PmpR family, at 690,986 to 691,726
_0693
EX28DRAFT_0694: EX28DRAFT_0694 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 691,761 to 692,282
_0694
EX28DRAFT_0695: EX28DRAFT_0695 - Holliday junction DNA helicase subunit RuvA, at 692,363 to 692,977
_0695
Position (kb) 690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 690.523 kb on + strand at 690.997 kb on + strand at 690.997 kb on + strand at 690.997 kb on + strand at 691.000 kb on + strand at 691.000 kb on + strand at 691.121 kb on - strand, within EX28DRAFT_0693 at 691.244 kb on + strand, within EX28DRAFT_0693 at 691.682 kb on + strand at 691.737 kb on + strand at 692.322 kb on + strand at 692.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 690,523 + -1.1 690,997 + -1.0 690,997 + -1.4 690,997 + -0.2 691,000 + -1.7 691,000 + -1.8 691,121 - EX28DRAFT_0693 0.18 -4.6 691,244 + EX28DRAFT_0693 0.35 -0.5 691,682 + -1.4 691,737 + +0.1 692,322 + +0.7 692,334 + -0.1
Or see this region's nucleotide sequence