Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0660 and EX28DRAFT_0661 overlap by 4 nucleotides EX28DRAFT_0661 and EX28DRAFT_0662 are separated by 4 nucleotides
EX28DRAFT_0660: EX28DRAFT_0660 - flagellar motor stator protein MotA, at 654,207 to 655,094
_0660
EX28DRAFT_0661: EX28DRAFT_0661 - Flagellar motor protein, at 655,091 to 656,020
_0661
EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061
_0662
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1 at 654.123 kb on + strand at 654.123 kb on + strand at 654.182 kb on + strand at 654.213 kb on - strand at 654.213 kb on - strand at 654.218 kb on - strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.221 kb on - strand at 654.221 kb on - strand at 654.232 kb on + strand at 654.232 kb on + strand at 654.258 kb on + strand at 654.291 kb on + strand at 654.292 kb on - strand at 654.292 kb on - strand at 654.308 kb on + strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.311 kb on + strand, within EX28DRAFT_0660 at 654.342 kb on - strand, within EX28DRAFT_0660 at 654.359 kb on + strand, within EX28DRAFT_0660 at 654.360 kb on - strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.425 kb on + strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.510 kb on + strand, within EX28DRAFT_0660 at 654.544 kb on - strand, within EX28DRAFT_0660 at 654.623 kb on + strand, within EX28DRAFT_0660 at 654.624 kb on - strand, within EX28DRAFT_0660 at 654.624 kb on - strand, within EX28DRAFT_0660 at 654.843 kb on - strand, within EX28DRAFT_0660 at 654.992 kb on + strand, within EX28DRAFT_0660 at 655.192 kb on + strand, within EX28DRAFT_0661 at 655.275 kb on - strand, within EX28DRAFT_0661 at 655.604 kb on + strand, within EX28DRAFT_0661 at 655.774 kb on - strand, within EX28DRAFT_0661 at 655.881 kb on + strand, within EX28DRAFT_0661 at 656.037 kb on - strand at 656.171 kb on + strand at 656.173 kb on + strand at 656.174 kb on - strand at 656.174 kb on - strand at 656.202 kb on - strand at 656.202 kb on - strand at 656.228 kb on - strand at 656.286 kb on - strand, within EX28DRAFT_0662 at 656.286 kb on - strand, within EX28DRAFT_0662 at 656.312 kb on + strand, within EX28DRAFT_0662 at 656.313 kb on - strand, within EX28DRAFT_0662 at 656.314 kb on + strand, within EX28DRAFT_0662 at 656.315 kb on + strand, within EX28DRAFT_0662 at 656.339 kb on + strand, within EX28DRAFT_0662 at 656.340 kb on - strand, within EX28DRAFT_0662 at 656.376 kb on + strand, within EX28DRAFT_0662 at 656.377 kb on - strand, within EX28DRAFT_0662 at 656.594 kb on - strand, within EX28DRAFT_0662
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 654,123 + +0.1 654,123 + -0.3 654,182 + +0.0 654,213 - +0.5 654,213 - +1.5 654,218 - +0.3 654,220 + +0.5 654,220 + +0.1 654,220 + +0.8 654,221 - -0.6 654,221 - +0.0 654,232 + +0.0 654,232 + -0.8 654,258 + -1.4 654,291 + -0.2 654,292 - -1.0 654,292 - -1.8 654,308 + EX28DRAFT_0660 0.11 -0.1 654,309 - EX28DRAFT_0660 0.11 -1.3 654,309 - EX28DRAFT_0660 0.11 -0.2 654,311 + EX28DRAFT_0660 0.12 -1.3 654,342 - EX28DRAFT_0660 0.15 -1.0 654,359 + EX28DRAFT_0660 0.17 +0.1 654,360 - EX28DRAFT_0660 0.17 -0.1 654,414 + EX28DRAFT_0660 0.23 -1.5 654,414 + EX28DRAFT_0660 0.23 -0.4 654,425 + EX28DRAFT_0660 0.25 +0.6 654,426 - EX28DRAFT_0660 0.25 -0.5 654,426 - EX28DRAFT_0660 0.25 +0.1 654,426 - EX28DRAFT_0660 0.25 +0.4 654,426 - EX28DRAFT_0660 0.25 +1.2 654,426 - EX28DRAFT_0660 0.25 -1.3 654,429 + EX28DRAFT_0660 0.25 -1.0 654,429 + EX28DRAFT_0660 0.25 +0.8 654,429 + EX28DRAFT_0660 0.25 +0.2 654,429 + EX28DRAFT_0660 0.25 +0.9 654,430 - EX28DRAFT_0660 0.25 -0.0 654,430 - EX28DRAFT_0660 0.25 +0.5 654,430 - EX28DRAFT_0660 0.25 +0.0 654,430 - EX28DRAFT_0660 0.25 -0.3 654,431 + EX28DRAFT_0660 0.25 -0.6 654,431 + EX28DRAFT_0660 0.25 +1.0 654,432 - EX28DRAFT_0660 0.25 -0.6 654,432 - EX28DRAFT_0660 0.25 +0.6 654,432 - EX28DRAFT_0660 0.25 -0.7 654,432 - EX28DRAFT_0660 0.25 -1.2 654,510 + EX28DRAFT_0660 0.34 +0.2 654,544 - EX28DRAFT_0660 0.38 -0.5 654,623 + EX28DRAFT_0660 0.47 +0.2 654,624 - EX28DRAFT_0660 0.47 +0.2 654,624 - EX28DRAFT_0660 0.47 +0.5 654,843 - EX28DRAFT_0660 0.72 -0.0 654,992 + EX28DRAFT_0660 0.88 +0.2 655,192 + EX28DRAFT_0661 0.11 +1.2 655,275 - EX28DRAFT_0661 0.20 -0.9 655,604 + EX28DRAFT_0661 0.55 -0.3 655,774 - EX28DRAFT_0661 0.73 -0.1 655,881 + EX28DRAFT_0661 0.85 -0.5 656,037 - -0.3 656,171 + -0.2 656,173 + -0.1 656,174 - +0.1 656,174 - -1.8 656,202 - -0.0 656,202 - -1.0 656,228 - +0.5 656,286 - EX28DRAFT_0662 0.13 -0.3 656,286 - EX28DRAFT_0662 0.13 +0.3 656,312 + EX28DRAFT_0662 0.14 -0.1 656,313 - EX28DRAFT_0662 0.14 -0.1 656,314 + EX28DRAFT_0662 0.14 +0.3 656,315 + EX28DRAFT_0662 0.14 -0.9 656,339 + EX28DRAFT_0662 0.15 -0.6 656,340 - EX28DRAFT_0662 0.15 -0.8 656,376 + EX28DRAFT_0662 0.17 -0.8 656,377 - EX28DRAFT_0662 0.17 -1.0 656,594 - EX28DRAFT_0662 0.28 -0.0
Or see this region's nucleotide sequence