Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0657

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0656 and EX28DRAFT_0657 are separated by 15 nucleotidesEX28DRAFT_0657 and EX28DRAFT_0658 are separated by 794 nucleotides EX28DRAFT_0656: EX28DRAFT_0656 - alpha,alpha-trehalose-phosphate synthase [UDP-forming], at 650,489 to 651,913 _0656 EX28DRAFT_0657: EX28DRAFT_0657 - Universal stress protein UspA and related nucleotide-binding proteins, at 651,929 to 652,357 _0657 EX28DRAFT_0658: EX28DRAFT_0658 - Flagellar transcriptional activator (FlhD), at 653,152 to 653,502 _0658 Position (kb) 651 652 653Strain fitness (log2 ratio) -3 -2 -1 0 1at 651.088 kb on + strand, within EX28DRAFT_0656at 651.089 kb on - strand, within EX28DRAFT_0656at 651.233 kb on - strand, within EX28DRAFT_0656at 651.600 kb on - strand, within EX28DRAFT_0656at 651.760 kb on + strand, within EX28DRAFT_0656at 651.805 kb on + strandat 651.841 kb on - strandat 651.841 kb on - strandat 651.916 kb on + strandat 651.982 kb on + strand, within EX28DRAFT_0657at 652.044 kb on - strand, within EX28DRAFT_0657at 652.044 kb on - strand, within EX28DRAFT_0657at 652.069 kb on + strand, within EX28DRAFT_0657at 652.079 kb on - strand, within EX28DRAFT_0657at 652.116 kb on + strand, within EX28DRAFT_0657at 652.197 kb on - strand, within EX28DRAFT_0657at 652.220 kb on - strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.442 kb on + strandat 652.474 kb on + strandat 652.641 kb on + strandat 652.643 kb on + strandat 652.691 kb on + strandat 652.692 kb on - strandat 652.775 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.910 kb on - strandat 652.910 kb on - strandat 652.910 kb on - strandat 652.958 kb on + strandat 652.962 kb on + strandat 652.962 kb on + strandat 652.987 kb on + strandat 652.988 kb on - strandat 652.988 kb on - strandat 653.015 kb on - strandat 653.029 kb on + strandat 653.030 kb on - strandat 653.030 kb on - strandat 653.047 kb on + strandat 653.048 kb on - strandat 653.055 kb on + strandat 653.055 kb on + strandat 653.124 kb on + strandat 653.127 kb on + strandat 653.127 kb on + strandat 653.127 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.158 kb on - strandat 653.158 kb on - strandat 653.158 kb on - strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.178 kb on + strandat 653.178 kb on + strandat 653.178 kb on + strandat 653.179 kb on - strandat 653.179 kb on - strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.201 kb on - strand, within EX28DRAFT_0658at 653.204 kb on + strand, within EX28DRAFT_0658at 653.204 kb on + strand, within EX28DRAFT_0658at 653.205 kb on - strand, within EX28DRAFT_0658at 653.227 kb on - strand, within EX28DRAFT_0658at 653.227 kb on - strand, within EX28DRAFT_0658

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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651,088 + EX28DRAFT_0656 0.42 +0.1
651,089 - EX28DRAFT_0656 0.42 +0.5
651,233 - EX28DRAFT_0656 0.52 +1.2
651,600 - EX28DRAFT_0656 0.78 -0.9
651,760 + EX28DRAFT_0656 0.89 +0.1
651,805 + +0.8
651,841 - +0.0
651,841 - +0.7
651,916 + +0.2
651,982 + EX28DRAFT_0657 0.12 +0.3
652,044 - EX28DRAFT_0657 0.27 -1.0
652,044 - EX28DRAFT_0657 0.27 -0.2
652,069 + EX28DRAFT_0657 0.33 +0.9
652,079 - EX28DRAFT_0657 0.35 +0.3
652,116 + EX28DRAFT_0657 0.44 +1.0
652,197 - EX28DRAFT_0657 0.62 +0.7
652,220 - EX28DRAFT_0657 0.68 +0.1
652,221 + EX28DRAFT_0657 0.68 -2.6
652,221 + EX28DRAFT_0657 0.68 -1.4
652,222 - EX28DRAFT_0657 0.68 +0.2
652,222 - EX28DRAFT_0657 0.68 -0.0
652,222 - EX28DRAFT_0657 0.68 +0.3
652,442 + +0.0
652,474 + +0.8
652,641 + -0.2
652,643 + -0.2
652,691 + +0.4
652,692 - +0.3
652,775 + +0.6
652,909 + +0.2
652,909 + -1.2
652,909 + +0.1
652,909 + +0.4
652,909 + +0.3
652,909 + +0.9
652,910 - +0.2
652,910 - -0.5
652,910 - +0.1
652,958 + +0.1
652,962 + +0.2
652,962 + +0.4
652,987 + +0.2
652,988 - -0.2
652,988 - -3.3
653,015 - +0.1
653,029 + -0.5
653,030 - -0.9
653,030 - +0.9
653,047 + +1.6
653,048 - +0.1
653,055 + +0.0
653,055 + +0.1
653,124 + -0.5
653,127 + +0.2
653,127 + +1.0
653,127 + -0.5
653,157 + -0.1
653,157 + -0.5
653,157 + -0.3
653,157 + -0.6
653,157 + +0.8
653,157 + -0.2
653,157 + +0.0
653,157 + +0.0
653,157 + -0.2
653,157 + -0.0
653,157 + +0.9
653,158 - -0.2
653,158 - -0.7
653,158 - +0.6
653,171 + +1.0
653,171 + -1.1
653,171 + +0.2
653,171 + -0.3
653,178 + +0.9
653,178 + +0.2
653,178 + +0.4
653,179 - -0.2
653,179 - +0.1
653,182 + +0.3
653,182 + -0.0
653,182 + -0.4
653,182 + -0.1
653,182 + -0.2
653,182 + +0.2
653,182 + -1.4
653,182 + -0.1
653,183 - +1.7
653,183 - -0.9
653,183 - -0.0
653,183 - +0.4
653,201 - EX28DRAFT_0658 0.14 +0.2
653,204 + EX28DRAFT_0658 0.15 -0.0
653,204 + EX28DRAFT_0658 0.15 +0.3
653,205 - EX28DRAFT_0658 0.15 -0.4
653,227 - EX28DRAFT_0658 0.21 +0.3
653,227 - EX28DRAFT_0658 0.21 +0.0

Or see this region's nucleotide sequence