Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0592 and EX28DRAFT_0593 are separated by 61 nucleotides EX28DRAFT_0593 and EX28DRAFT_0594 overlap by 20 nucleotides EX28DRAFT_0594 and EX28DRAFT_0595 overlap by 29 nucleotides
EX28DRAFT_0592: EX28DRAFT_0592 - Predicted HD superfamily hydrolase, at 595,503 to 596,204
_0592
EX28DRAFT_0593: EX28DRAFT_0593 - DNA-methyltransferase (dcm), at 596,266 to 597,681
_0593
EX28DRAFT_0594: EX28DRAFT_0594 - T/G mismatch-specific endonuclease (EC 3.1.-.-), at 597,662 to 598,153
_0594
EX28DRAFT_0595: EX28DRAFT_0595 - Predicted permease, DMT superfamily, at 598,125 to 599,039
_0595
Position (kb) 596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 595.289 kb on - strand at 595.580 kb on + strand, within EX28DRAFT_0592 at 595.668 kb on + strand, within EX28DRAFT_0592 at 595.668 kb on + strand, within EX28DRAFT_0592 at 595.791 kb on - strand, within EX28DRAFT_0592 at 595.791 kb on - strand, within EX28DRAFT_0592 at 595.854 kb on - strand, within EX28DRAFT_0592 at 596.052 kb on - strand, within EX28DRAFT_0592 at 596.052 kb on - strand, within EX28DRAFT_0592 at 596.262 kb on - strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.345 kb on - strand at 596.345 kb on - strand at 596.345 kb on - strand at 596.352 kb on + strand at 596.353 kb on - strand at 596.515 kb on + strand, within EX28DRAFT_0593 at 596.515 kb on + strand, within EX28DRAFT_0593 at 596.633 kb on - strand, within EX28DRAFT_0593 at 596.633 kb on - strand, within EX28DRAFT_0593 at 596.633 kb on - strand, within EX28DRAFT_0593 at 596.648 kb on - strand, within EX28DRAFT_0593 at 597.096 kb on + strand, within EX28DRAFT_0593 at 597.253 kb on + strand, within EX28DRAFT_0593 at 597.254 kb on - strand, within EX28DRAFT_0593 at 597.315 kb on - strand, within EX28DRAFT_0593 at 597.361 kb on + strand, within EX28DRAFT_0593 at 597.364 kb on + strand, within EX28DRAFT_0593 at 597.364 kb on + strand, within EX28DRAFT_0593 at 597.365 kb on - strand, within EX28DRAFT_0593 at 597.366 kb on + strand, within EX28DRAFT_0593 at 597.700 kb on + strand at 597.701 kb on - strand at 597.889 kb on + strand, within EX28DRAFT_0594 at 598.127 kb on - strand at 598.173 kb on + strand at 598.178 kb on - strand at 598.301 kb on - strand, within EX28DRAFT_0595 at 598.349 kb on + strand, within EX28DRAFT_0595 at 598.349 kb on + strand, within EX28DRAFT_0595 at 598.350 kb on - strand, within EX28DRAFT_0595 at 598.350 kb on - strand, within EX28DRAFT_0595 at 598.351 kb on + strand, within EX28DRAFT_0595
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 595,289 - -0.8 595,580 + EX28DRAFT_0592 0.11 -0.1 595,668 + EX28DRAFT_0592 0.24 -0.4 595,668 + EX28DRAFT_0592 0.24 -0.5 595,791 - EX28DRAFT_0592 0.41 -0.2 595,791 - EX28DRAFT_0592 0.41 -0.3 595,854 - EX28DRAFT_0592 0.50 +1.1 596,052 - EX28DRAFT_0592 0.78 +1.0 596,052 - EX28DRAFT_0592 0.78 -0.3 596,262 - -0.5 596,344 + -2.0 596,344 + -1.1 596,344 + -2.1 596,344 + -1.0 596,344 + -2.3 596,344 + -2.4 596,345 - -0.1 596,345 - -2.4 596,345 - -2.5 596,352 + -2.5 596,353 - -2.2 596,515 + EX28DRAFT_0593 0.18 -2.8 596,515 + EX28DRAFT_0593 0.18 -1.0 596,633 - EX28DRAFT_0593 0.26 -1.8 596,633 - EX28DRAFT_0593 0.26 -1.6 596,633 - EX28DRAFT_0593 0.26 -1.8 596,648 - EX28DRAFT_0593 0.27 -0.9 597,096 + EX28DRAFT_0593 0.59 -1.8 597,253 + EX28DRAFT_0593 0.70 -1.5 597,254 - EX28DRAFT_0593 0.70 -1.7 597,315 - EX28DRAFT_0593 0.74 -1.6 597,361 + EX28DRAFT_0593 0.77 -1.4 597,364 + EX28DRAFT_0593 0.78 -2.4 597,364 + EX28DRAFT_0593 0.78 -1.9 597,365 - EX28DRAFT_0593 0.78 -1.9 597,366 + EX28DRAFT_0593 0.78 -2.0 597,700 + +0.3 597,701 - +1.0 597,889 + EX28DRAFT_0594 0.46 +0.5 598,127 - +1.0 598,173 + +0.1 598,178 - +0.5 598,301 - EX28DRAFT_0595 0.19 -0.4 598,349 + EX28DRAFT_0595 0.24 +0.1 598,349 + EX28DRAFT_0595 0.24 -0.1 598,350 - EX28DRAFT_0595 0.25 +0.3 598,350 - EX28DRAFT_0595 0.25 +0.1 598,351 + EX28DRAFT_0595 0.25 -0.8
Or see this region's nucleotide sequence