Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0566

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0565 and EX28DRAFT_0566 are separated by 96 nucleotidesEX28DRAFT_0566 and EX28DRAFT_0567 are separated by 43 nucleotidesEX28DRAFT_0567 and EX28DRAFT_0568 are separated by 107 nucleotides EX28DRAFT_0565: EX28DRAFT_0565 - Transcriptional regulator, at 562,069 to 562,986 _0565 EX28DRAFT_0566: EX28DRAFT_0566 - Transcriptional regulator, at 563,083 to 564,033 _0566 EX28DRAFT_0567: EX28DRAFT_0567 - Glutathione S-transferase, at 564,077 to 564,748 _0567 EX28DRAFT_0568: EX28DRAFT_0568 - Transcriptional regulator, at 564,856 to 565,767 _0568 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1at 562.090 kb on + strandat 562.091 kb on - strandat 562.261 kb on + strand, within EX28DRAFT_0565at 562.261 kb on + strand, within EX28DRAFT_0565at 562.262 kb on - strand, within EX28DRAFT_0565at 562.264 kb on - strand, within EX28DRAFT_0565at 562.383 kb on + strand, within EX28DRAFT_0565at 562.438 kb on + strand, within EX28DRAFT_0565at 562.439 kb on - strand, within EX28DRAFT_0565at 562.604 kb on + strand, within EX28DRAFT_0565at 562.636 kb on + strand, within EX28DRAFT_0565at 562.652 kb on - strand, within EX28DRAFT_0565at 562.652 kb on - strand, within EX28DRAFT_0565at 562.875 kb on + strand, within EX28DRAFT_0565at 562.875 kb on + strand, within EX28DRAFT_0565at 563.002 kb on + strandat 563.047 kb on - strandat 563.058 kb on + strandat 563.058 kb on + strandat 563.059 kb on - strandat 563.059 kb on - strandat 563.059 kb on - strandat 563.059 kb on - strandat 563.059 kb on - strandat 563.101 kb on - strandat 563.131 kb on + strandat 563.155 kb on - strandat 563.161 kb on + strandat 563.161 kb on + strandat 563.162 kb on - strandat 563.162 kb on - strandat 563.163 kb on + strandat 563.164 kb on - strandat 563.164 kb on - strandat 563.283 kb on - strand, within EX28DRAFT_0566at 563.419 kb on - strand, within EX28DRAFT_0566at 563.592 kb on - strand, within EX28DRAFT_0566at 563.592 kb on - strand, within EX28DRAFT_0566at 563.592 kb on - strand, within EX28DRAFT_0566at 563.779 kb on + strand, within EX28DRAFT_0566at 563.929 kb on + strand, within EX28DRAFT_0566at 563.929 kb on + strand, within EX28DRAFT_0566at 563.930 kb on - strand, within EX28DRAFT_0566at 564.032 kb on - strandat 564.188 kb on - strand, within EX28DRAFT_0567at 564.299 kb on - strand, within EX28DRAFT_0567at 564.299 kb on - strand, within EX28DRAFT_0567at 564.354 kb on + strand, within EX28DRAFT_0567at 564.355 kb on - strand, within EX28DRAFT_0567at 564.486 kb on - strand, within EX28DRAFT_0567at 564.510 kb on - strand, within EX28DRAFT_0567at 564.580 kb on + strand, within EX28DRAFT_0567at 564.647 kb on + strand, within EX28DRAFT_0567at 564.651 kb on + strand, within EX28DRAFT_0567at 564.651 kb on + strand, within EX28DRAFT_0567at 564.651 kb on + strand, within EX28DRAFT_0567at 564.651 kb on + strand, within EX28DRAFT_0567at 564.652 kb on - strand, within EX28DRAFT_0567at 564.652 kb on - strand, within EX28DRAFT_0567at 564.680 kb on - strand, within EX28DRAFT_0567at 564.680 kb on - strand, within EX28DRAFT_0567at 564.744 kb on + strandat 564.744 kb on + strandat 564.744 kb on + strandat 564.745 kb on - strandat 564.745 kb on - strandat 564.749 kb on + strandat 564.750 kb on - strandat 564.767 kb on + strandat 564.768 kb on - strandat 564.777 kb on - strandat 564.794 kb on - strandat 564.796 kb on + strandat 564.796 kb on + strandat 564.797 kb on - strandat 564.800 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
562,090 + -0.2
562,091 - -0.6
562,261 + EX28DRAFT_0565 0.21 -0.2
562,261 + EX28DRAFT_0565 0.21 +0.0
562,262 - EX28DRAFT_0565 0.21 +0.3
562,264 - EX28DRAFT_0565 0.21 +0.7
562,383 + EX28DRAFT_0565 0.34 +0.2
562,438 + EX28DRAFT_0565 0.40 -0.8
562,439 - EX28DRAFT_0565 0.40 -1.2
562,604 + EX28DRAFT_0565 0.58 -0.4
562,636 + EX28DRAFT_0565 0.62 -0.5
562,652 - EX28DRAFT_0565 0.64 -0.8
562,652 - EX28DRAFT_0565 0.64 +0.2
562,875 + EX28DRAFT_0565 0.88 +0.2
562,875 + EX28DRAFT_0565 0.88 +0.0
563,002 + +0.3
563,047 - -1.1
563,058 + +0.5
563,058 + +0.5
563,059 - +0.1
563,059 - -2.0
563,059 - -0.2
563,059 - +0.9
563,059 - -1.6
563,101 - -0.3
563,131 + -0.3
563,155 - -0.4
563,161 + -1.3
563,161 + -0.0
563,162 - -0.2
563,162 - +0.1
563,163 + -1.4
563,164 - -0.4
563,164 - -0.4
563,283 - EX28DRAFT_0566 0.21 -0.1
563,419 - EX28DRAFT_0566 0.35 +0.4
563,592 - EX28DRAFT_0566 0.54 +0.2
563,592 - EX28DRAFT_0566 0.54 -0.4
563,592 - EX28DRAFT_0566 0.54 -1.4
563,779 + EX28DRAFT_0566 0.73 -0.4
563,929 + EX28DRAFT_0566 0.89 -1.8
563,929 + EX28DRAFT_0566 0.89 -0.3
563,930 - EX28DRAFT_0566 0.89 -0.6
564,032 - -3.3
564,188 - EX28DRAFT_0567 0.17 -0.3
564,299 - EX28DRAFT_0567 0.33 -0.2
564,299 - EX28DRAFT_0567 0.33 -0.2
564,354 + EX28DRAFT_0567 0.41 +0.1
564,355 - EX28DRAFT_0567 0.41 -0.0
564,486 - EX28DRAFT_0567 0.61 +0.6
564,510 - EX28DRAFT_0567 0.64 -0.5
564,580 + EX28DRAFT_0567 0.75 -0.0
564,647 + EX28DRAFT_0567 0.85 -0.6
564,651 + EX28DRAFT_0567 0.85 +0.5
564,651 + EX28DRAFT_0567 0.85 -0.1
564,651 + EX28DRAFT_0567 0.85 -0.1
564,651 + EX28DRAFT_0567 0.85 +0.7
564,652 - EX28DRAFT_0567 0.86 -0.0
564,652 - EX28DRAFT_0567 0.86 -0.0
564,680 - EX28DRAFT_0567 0.90 +0.5
564,680 - EX28DRAFT_0567 0.90 -0.2
564,744 + -0.6
564,744 + +1.1
564,744 + +0.1
564,745 - -0.3
564,745 - +0.1
564,749 + +0.0
564,750 - +0.4
564,767 + +0.5
564,768 - -0.3
564,777 - -0.2
564,794 - -0.0
564,796 + +0.3
564,796 + -0.2
564,797 - -0.5
564,800 - -0.6

Or see this region's nucleotide sequence