Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0557

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0556 and EX28DRAFT_0557 are separated by 256 nucleotidesEX28DRAFT_0557 and EX28DRAFT_0558 overlap by 4 nucleotidesEX28DRAFT_0558 and EX28DRAFT_0559 overlap by 4 nucleotides EX28DRAFT_0556: EX28DRAFT_0556 - metabolite-proton symporter, at 549,831 to 551,147 _0556 EX28DRAFT_0557: EX28DRAFT_0557 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 551,404 to 551,979 _0557 EX28DRAFT_0558: EX28DRAFT_0558 - Uncharacterized protein conserved in bacteria, at 551,976 to 552,941 _0558 EX28DRAFT_0559: EX28DRAFT_0559 - Cation/multidrug efflux pump, at 552,938 to 556,000 _0559 Position (kb) 551 552Strain fitness (log2 ratio) -1 0 1at 550.587 kb on - strand, within EX28DRAFT_0556at 550.596 kb on - strand, within EX28DRAFT_0556at 550.596 kb on - strand, within EX28DRAFT_0556at 550.599 kb on + strand, within EX28DRAFT_0556at 550.600 kb on - strand, within EX28DRAFT_0556at 550.600 kb on - strand, within EX28DRAFT_0556at 550.663 kb on + strand, within EX28DRAFT_0556at 550.705 kb on - strand, within EX28DRAFT_0556at 551.042 kb on - strandat 551.172 kb on + strandat 551.172 kb on + strandat 551.172 kb on + strandat 551.177 kb on - strandat 551.177 kb on - strandat 551.185 kb on - strandat 551.268 kb on - strandat 551.318 kb on - strandat 551.320 kb on + strandat 551.321 kb on - strandat 551.367 kb on + strandat 551.367 kb on + strandat 551.367 kb on + strandat 551.367 kb on + strandat 551.368 kb on - strandat 551.368 kb on - strandat 551.566 kb on + strand, within EX28DRAFT_0557at 551.598 kb on + strand, within EX28DRAFT_0557at 551.598 kb on + strand, within EX28DRAFT_0557at 551.603 kb on - strand, within EX28DRAFT_0557at 551.627 kb on - strand, within EX28DRAFT_0557at 551.848 kb on + strand, within EX28DRAFT_0557at 551.849 kb on - strand, within EX28DRAFT_0557at 551.849 kb on - strand, within EX28DRAFT_0557at 551.849 kb on - strand, within EX28DRAFT_0557at 551.892 kb on + strand, within EX28DRAFT_0557at 551.892 kb on + strand, within EX28DRAFT_0557at 551.893 kb on - strand, within EX28DRAFT_0557at 551.893 kb on - strand, within EX28DRAFT_0557at 551.917 kb on + strand, within EX28DRAFT_0557at 551.917 kb on + strand, within EX28DRAFT_0557at 551.918 kb on - strand, within EX28DRAFT_0557at 551.932 kb on + strandat 551.932 kb on + strandat 551.933 kb on - strandat 551.933 kb on - strandat 551.933 kb on - strandat 551.969 kb on + strandat 552.041 kb on + strandat 552.136 kb on + strand, within EX28DRAFT_0558at 552.137 kb on - strand, within EX28DRAFT_0558at 552.237 kb on - strand, within EX28DRAFT_0558at 552.247 kb on + strand, within EX28DRAFT_0558at 552.247 kb on + strand, within EX28DRAFT_0558at 552.248 kb on - strand, within EX28DRAFT_0558at 552.248 kb on - strand, within EX28DRAFT_0558at 552.341 kb on + strand, within EX28DRAFT_0558at 552.434 kb on - strand, within EX28DRAFT_0558at 552.497 kb on - strand, within EX28DRAFT_0558at 552.607 kb on + strand, within EX28DRAFT_0558at 552.646 kb on - strand, within EX28DRAFT_0558at 552.649 kb on + strand, within EX28DRAFT_0558at 552.679 kb on + strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.854 kb on - strandat 552.854 kb on - strandat 552.854 kb on - strandat 552.871 kb on + strandat 552.879 kb on - strandat 552.899 kb on + strandat 552.900 kb on - strandat 552.900 kb on - strandat 552.961 kb on + strandat 552.962 kb on - strandat 552.962 kb on - strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.979 kb on - strandat 552.979 kb on - strandat 552.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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550,587 - EX28DRAFT_0556 0.57 +0.3
550,596 - EX28DRAFT_0556 0.58 +1.4
550,596 - EX28DRAFT_0556 0.58 -0.1
550,599 + EX28DRAFT_0556 0.58 -0.1
550,600 - EX28DRAFT_0556 0.58 -0.2
550,600 - EX28DRAFT_0556 0.58 +0.1
550,663 + EX28DRAFT_0556 0.63 -0.2
550,705 - EX28DRAFT_0556 0.66 +0.3
551,042 - -0.4
551,172 + +0.3
551,172 + -1.4
551,172 + -0.2
551,177 - +0.1
551,177 - +0.2
551,185 - +0.4
551,268 - -0.5
551,318 - +0.2
551,320 + +1.2
551,321 - +0.0
551,367 + +0.5
551,367 + +1.1
551,367 + -0.2
551,367 + +1.6
551,368 - +0.1
551,368 - -0.2
551,566 + EX28DRAFT_0557 0.28 -0.3
551,598 + EX28DRAFT_0557 0.34 -0.3
551,598 + EX28DRAFT_0557 0.34 -0.2
551,603 - EX28DRAFT_0557 0.35 -1.2
551,627 - EX28DRAFT_0557 0.39 -0.5
551,848 + EX28DRAFT_0557 0.77 -0.1
551,849 - EX28DRAFT_0557 0.77 -0.8
551,849 - EX28DRAFT_0557 0.77 -0.0
551,849 - EX28DRAFT_0557 0.77 +0.0
551,892 + EX28DRAFT_0557 0.85 -0.2
551,892 + EX28DRAFT_0557 0.85 -0.1
551,893 - EX28DRAFT_0557 0.85 -0.3
551,893 - EX28DRAFT_0557 0.85 +0.1
551,917 + EX28DRAFT_0557 0.89 +0.1
551,917 + EX28DRAFT_0557 0.89 +0.2
551,918 - EX28DRAFT_0557 0.89 +0.1
551,932 + +0.3
551,932 + -0.8
551,933 - -0.1
551,933 - +0.4
551,933 - -0.7
551,969 + -0.0
552,041 + -0.4
552,136 + EX28DRAFT_0558 0.17 +0.3
552,137 - EX28DRAFT_0558 0.17 +0.0
552,237 - EX28DRAFT_0558 0.27 +0.2
552,247 + EX28DRAFT_0558 0.28 -0.3
552,247 + EX28DRAFT_0558 0.28 -0.0
552,248 - EX28DRAFT_0558 0.28 -0.4
552,248 - EX28DRAFT_0558 0.28 -0.1
552,341 + EX28DRAFT_0558 0.38 -0.1
552,434 - EX28DRAFT_0558 0.47 +0.1
552,497 - EX28DRAFT_0558 0.54 +1.3
552,607 + EX28DRAFT_0558 0.65 -0.7
552,646 - EX28DRAFT_0558 0.69 +0.2
552,649 + EX28DRAFT_0558 0.70 -0.0
552,679 + EX28DRAFT_0558 0.73 +1.0
552,680 - EX28DRAFT_0558 0.73 -0.5
552,680 - EX28DRAFT_0558 0.73 -0.5
552,680 - EX28DRAFT_0558 0.73 -0.2
552,680 - EX28DRAFT_0558 0.73 +0.1
552,854 - -1.0
552,854 - -0.1
552,854 - -0.4
552,871 + +0.2
552,879 - -0.4
552,899 + -0.1
552,900 - -0.4
552,900 - -0.1
552,961 + +0.1
552,962 - -0.1
552,962 - +0.6
552,978 + -0.0
552,978 + -0.7
552,978 + +0.1
552,978 + -0.2
552,978 + -0.1
552,978 + +0.2
552,979 - +0.3
552,979 - +0.1
552,979 - -0.1

Or see this region's nucleotide sequence