Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0539 and EX28DRAFT_0540 are separated by 5 nucleotides EX28DRAFT_0540 and EX28DRAFT_0541 are separated by 45 nucleotides EX28DRAFT_0541 and EX28DRAFT_0542 are separated by 201 nucleotides
EX28DRAFT_0539: EX28DRAFT_0539 - histidinol dehydrogenase, at 532,901 to 534,205
_0539
EX28DRAFT_0540: EX28DRAFT_0540 - ATP phosphoribosyltransferase, at 534,211 to 535,110
_0540
EX28DRAFT_0541: EX28DRAFT_0541 - RNA, at 535,156 to 535,279
_0541
EX28DRAFT_0542: EX28DRAFT_0542 - Nucleoside-diphosphate-sugar epimerases, at 535,481 to 536,305
_0542
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.569 kb on - strand, within EX28DRAFT_0539 at 533.569 kb on - strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.661 kb on + strand, within EX28DRAFT_0539 at 533.662 kb on - strand, within EX28DRAFT_0539 at 533.662 kb on - strand, within EX28DRAFT_0539 at 533.817 kb on + strand, within EX28DRAFT_0539 at 533.818 kb on - strand, within EX28DRAFT_0539 at 533.818 kb on - strand, within EX28DRAFT_0539 at 533.917 kb on + strand, within EX28DRAFT_0539 at 533.918 kb on - strand, within EX28DRAFT_0539 at 534.045 kb on + strand, within EX28DRAFT_0539 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.428 kb on + strand, within EX28DRAFT_0540 at 534.428 kb on + strand, within EX28DRAFT_0540 at 534.429 kb on - strand, within EX28DRAFT_0540 at 534.545 kb on + strand, within EX28DRAFT_0540 at 534.732 kb on + strand, within EX28DRAFT_0540 at 534.733 kb on - strand, within EX28DRAFT_0540 at 534.733 kb on - strand, within EX28DRAFT_0540 at 534.834 kb on - strand, within EX28DRAFT_0540 at 534.939 kb on + strand, within EX28DRAFT_0540 at 535.015 kb on - strand, within EX28DRAFT_0540 at 535.081 kb on - strand at 535.081 kb on - strand at 535.084 kb on + strand at 535.084 kb on + strand at 535.085 kb on - strand at 535.085 kb on - strand at 535.135 kb on + strand at 535.257 kb on - strand, within EX28DRAFT_0541 at 535.288 kb on - strand at 535.308 kb on - strand at 535.349 kb on + strand at 535.349 kb on + strand at 535.360 kb on + strand at 535.368 kb on - strand at 535.393 kb on - strand at 535.414 kb on - strand at 535.449 kb on - strand at 535.450 kb on + strand at 535.450 kb on + strand at 535.451 kb on - strand at 535.461 kb on + strand at 535.507 kb on - strand at 535.507 kb on - strand at 535.950 kb on + strand, within EX28DRAFT_0542 at 535.951 kb on - strand, within EX28DRAFT_0542 at 535.951 kb on - strand, within EX28DRAFT_0542 at 536.076 kb on + strand, within EX28DRAFT_0542 at 536.108 kb on + strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 533,569 - EX28DRAFT_0539 0.51 -0.7 533,569 - EX28DRAFT_0539 0.51 -1.9 533,659 + EX28DRAFT_0539 0.58 -0.9 533,659 + EX28DRAFT_0539 0.58 -3.2 533,659 + EX28DRAFT_0539 0.58 -3.0 533,660 - EX28DRAFT_0539 0.58 +0.9 533,660 - EX28DRAFT_0539 0.58 -2.7 533,660 - EX28DRAFT_0539 0.58 -1.9 533,661 + EX28DRAFT_0539 0.58 +1.9 533,662 - EX28DRAFT_0539 0.58 -3.2 533,662 - EX28DRAFT_0539 0.58 -1.3 533,817 + EX28DRAFT_0539 0.70 -0.7 533,818 - EX28DRAFT_0539 0.70 -3.1 533,818 - EX28DRAFT_0539 0.70 -0.9 533,917 + EX28DRAFT_0539 0.78 -3.1 533,918 - EX28DRAFT_0539 0.78 +0.0 534,045 + EX28DRAFT_0539 0.88 -1.7 534,389 - EX28DRAFT_0540 0.20 -3.0 534,389 - EX28DRAFT_0540 0.20 -2.3 534,389 - EX28DRAFT_0540 0.20 -1.7 534,389 - EX28DRAFT_0540 0.20 -1.7 534,428 + EX28DRAFT_0540 0.24 -0.9 534,428 + EX28DRAFT_0540 0.24 -1.5 534,429 - EX28DRAFT_0540 0.24 +0.3 534,545 + EX28DRAFT_0540 0.37 -1.3 534,732 + EX28DRAFT_0540 0.58 -0.8 534,733 - EX28DRAFT_0540 0.58 -2.8 534,733 - EX28DRAFT_0540 0.58 -2.5 534,834 - EX28DRAFT_0540 0.69 -2.1 534,939 + EX28DRAFT_0540 0.81 -0.9 535,015 - EX28DRAFT_0540 0.89 -3.2 535,081 - +1.9 535,081 - +0.4 535,084 + -2.6 535,084 + -2.4 535,085 - -1.6 535,085 - -0.9 535,135 + -3.0 535,257 - EX28DRAFT_0541 0.81 -0.5 535,288 - -1.2 535,308 - -0.8 535,349 + -2.1 535,349 + -1.3 535,360 + -0.6 535,368 - -3.2 535,393 - -0.2 535,414 - +0.4 535,449 - +0.2 535,450 + +0.5 535,450 + +0.1 535,451 - -1.6 535,461 + +0.2 535,507 - -0.5 535,507 - -0.5 535,950 + EX28DRAFT_0542 0.57 -0.4 535,951 - EX28DRAFT_0542 0.57 -0.5 535,951 - EX28DRAFT_0542 0.57 -0.2 536,076 + EX28DRAFT_0542 0.72 +0.3 536,108 + EX28DRAFT_0542 0.76 -0.1 536,109 - EX28DRAFT_0542 0.76 +0.8 536,109 - EX28DRAFT_0542 0.76 -0.5 536,109 - EX28DRAFT_0542 0.76 +0.0 536,109 - EX28DRAFT_0542 0.76 +0.0 536,109 - EX28DRAFT_0542 0.76 +0.6
Or see this region's nucleotide sequence