Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0487

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0485 and EX28DRAFT_0486 are separated by 130 nucleotidesEX28DRAFT_0486 and EX28DRAFT_0487 overlap by 36 nucleotidesEX28DRAFT_0487 and EX28DRAFT_0488 are separated by 343 nucleotides EX28DRAFT_0485: EX28DRAFT_0485 - Molecular chaperone, at 472,955 to 474,307 _0485 EX28DRAFT_0486: EX28DRAFT_0486 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 474,438 to 475,310 _0486 EX28DRAFT_0487: EX28DRAFT_0487 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 475,275 to 478,604 _0487 EX28DRAFT_0488: EX28DRAFT_0488 - uridine kinase (EC 2.7.1.48), at 478,948 to 479,589 _0488 Position (kb) 475 476 477 478 479Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 474.283 kb on + strandat 474.288 kb on + strandat 474.289 kb on - strandat 474.311 kb on - strandat 474.311 kb on - strandat 474.391 kb on + strandat 474.391 kb on + strandat 474.392 kb on - strandat 474.392 kb on - strandat 474.442 kb on - strandat 474.465 kb on + strandat 474.538 kb on - strand, within EX28DRAFT_0486at 474.541 kb on - strand, within EX28DRAFT_0486at 474.578 kb on - strand, within EX28DRAFT_0486at 474.609 kb on - strand, within EX28DRAFT_0486at 474.609 kb on - strand, within EX28DRAFT_0486at 475.063 kb on + strand, within EX28DRAFT_0486at 475.063 kb on + strand, within EX28DRAFT_0486at 475.063 kb on + strand, within EX28DRAFT_0486at 475.101 kb on + strand, within EX28DRAFT_0486at 475.153 kb on - strand, within EX28DRAFT_0486at 475.153 kb on - strand, within EX28DRAFT_0486at 475.247 kb on + strandat 475.248 kb on - strandat 475.248 kb on - strandat 475.248 kb on - strandat 475.248 kb on - strandat 475.254 kb on + strandat 475.255 kb on - strandat 475.256 kb on + strandat 475.291 kb on + strandat 475.292 kb on - strandat 475.308 kb on + strandat 475.483 kb on + strandat 475.483 kb on + strandat 475.519 kb on + strandat 475.519 kb on + strandat 475.664 kb on + strand, within EX28DRAFT_0487at 475.700 kb on + strand, within EX28DRAFT_0487at 475.735 kb on - strand, within EX28DRAFT_0487at 475.743 kb on + strand, within EX28DRAFT_0487at 475.744 kb on - strand, within EX28DRAFT_0487at 475.944 kb on - strand, within EX28DRAFT_0487at 476.006 kb on + strand, within EX28DRAFT_0487at 476.116 kb on + strand, within EX28DRAFT_0487at 476.124 kb on + strand, within EX28DRAFT_0487at 476.124 kb on + strand, within EX28DRAFT_0487at 476.125 kb on - strand, within EX28DRAFT_0487at 476.126 kb on + strand, within EX28DRAFT_0487at 476.225 kb on + strand, within EX28DRAFT_0487at 476.225 kb on + strand, within EX28DRAFT_0487at 476.234 kb on - strand, within EX28DRAFT_0487at 476.270 kb on - strand, within EX28DRAFT_0487at 476.566 kb on + strand, within EX28DRAFT_0487at 476.566 kb on + strand, within EX28DRAFT_0487at 476.566 kb on + strand, within EX28DRAFT_0487at 476.567 kb on - strand, within EX28DRAFT_0487at 476.567 kb on - strand, within EX28DRAFT_0487at 476.630 kb on + strand, within EX28DRAFT_0487at 476.738 kb on + strand, within EX28DRAFT_0487at 476.738 kb on + strand, within EX28DRAFT_0487at 476.754 kb on - strand, within EX28DRAFT_0487at 476.754 kb on - strand, within EX28DRAFT_0487at 476.868 kb on - strand, within EX28DRAFT_0487at 476.987 kb on + strand, within EX28DRAFT_0487at 476.988 kb on - strand, within EX28DRAFT_0487at 476.999 kb on + strand, within EX28DRAFT_0487at 477.194 kb on + strand, within EX28DRAFT_0487at 477.220 kb on + strand, within EX28DRAFT_0487at 477.221 kb on - strand, within EX28DRAFT_0487at 477.311 kb on + strand, within EX28DRAFT_0487at 477.444 kb on + strand, within EX28DRAFT_0487at 477.444 kb on + strand, within EX28DRAFT_0487at 477.466 kb on + strand, within EX28DRAFT_0487at 477.484 kb on + strand, within EX28DRAFT_0487at 477.484 kb on + strand, within EX28DRAFT_0487at 477.484 kb on + strand, within EX28DRAFT_0487at 477.484 kb on + strand, within EX28DRAFT_0487at 477.484 kb on + strand, within EX28DRAFT_0487at 477.484 kb on + strand, within EX28DRAFT_0487at 477.485 kb on - strand, within EX28DRAFT_0487at 477.485 kb on - strand, within EX28DRAFT_0487at 477.488 kb on + strand, within EX28DRAFT_0487at 477.488 kb on + strand, within EX28DRAFT_0487at 477.488 kb on + strand, within EX28DRAFT_0487at 477.488 kb on + strand, within EX28DRAFT_0487at 477.489 kb on - strand, within EX28DRAFT_0487at 477.489 kb on - strand, within EX28DRAFT_0487at 477.489 kb on - strand, within EX28DRAFT_0487at 477.608 kb on + strand, within EX28DRAFT_0487at 477.743 kb on - strand, within EX28DRAFT_0487at 477.743 kb on - strand, within EX28DRAFT_0487at 477.743 kb on - strand, within EX28DRAFT_0487at 477.808 kb on - strand, within EX28DRAFT_0487at 477.935 kb on + strand, within EX28DRAFT_0487at 477.935 kb on + strand, within EX28DRAFT_0487at 477.936 kb on - strand, within EX28DRAFT_0487at 478.064 kb on - strand, within EX28DRAFT_0487at 478.077 kb on + strand, within EX28DRAFT_0487at 478.078 kb on - strand, within EX28DRAFT_0487at 478.078 kb on - strand, within EX28DRAFT_0487at 478.142 kb on + strand, within EX28DRAFT_0487at 478.261 kb on + strand, within EX28DRAFT_0487at 478.261 kb on + strand, within EX28DRAFT_0487at 478.261 kb on + strand, within EX28DRAFT_0487at 478.327 kb on + strandat 478.328 kb on - strandat 478.328 kb on - strandat 478.377 kb on - strandat 478.512 kb on + strandat 478.513 kb on - strandat 478.513 kb on - strandat 478.518 kb on - strandat 478.524 kb on - strandat 478.557 kb on + strandat 478.574 kb on + strandat 478.592 kb on - strandat 478.592 kb on - strandat 478.664 kb on + strandat 478.674 kb on + strandat 478.674 kb on + strandat 478.680 kb on - strandat 478.739 kb on + strandat 478.739 kb on + strandat 478.740 kb on - strandat 478.881 kb on - strandat 478.881 kb on - strandat 478.957 kb on - strandat 478.957 kb on - strandat 478.957 kb on - strandat 478.977 kb on + strandat 479.026 kb on - strand, within EX28DRAFT_0488at 479.054 kb on + strand, within EX28DRAFT_0488at 479.055 kb on - strand, within EX28DRAFT_0488at 479.092 kb on + strand, within EX28DRAFT_0488at 479.092 kb on + strand, within EX28DRAFT_0488at 479.143 kb on + strand, within EX28DRAFT_0488at 479.143 kb on + strand, within EX28DRAFT_0488at 479.144 kb on - strand, within EX28DRAFT_0488at 479.144 kb on - strand, within EX28DRAFT_0488at 479.190 kb on - strand, within EX28DRAFT_0488at 479.231 kb on - strand, within EX28DRAFT_0488at 479.237 kb on - strand, within EX28DRAFT_0488at 479.408 kb on + strand, within EX28DRAFT_0488at 479.409 kb on - strand, within EX28DRAFT_0488at 479.449 kb on + strand, within EX28DRAFT_0488at 479.504 kb on - strand, within EX28DRAFT_0488at 479.533 kb on - strandat 479.548 kb on - strandat 479.548 kb on - strandat 479.548 kb on - strandat 479.548 kb on - strandat 479.559 kb on - strandat 479.559 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
474,283 + -0.2
474,288 + +0.4
474,289 - -0.2
474,311 - +0.4
474,311 - -0.6
474,391 + -5.1
474,391 + +2.9
474,392 - +0.3
474,392 - +0.8
474,442 - +0.1
474,465 + +0.1
474,538 - EX28DRAFT_0486 0.11 -0.1
474,541 - EX28DRAFT_0486 0.12 -0.9
474,578 - EX28DRAFT_0486 0.16 -0.9
474,609 - EX28DRAFT_0486 0.20 -0.2
474,609 - EX28DRAFT_0486 0.20 +0.3
475,063 + EX28DRAFT_0486 0.72 -0.0
475,063 + EX28DRAFT_0486 0.72 +0.1
475,063 + EX28DRAFT_0486 0.72 +0.0
475,101 + EX28DRAFT_0486 0.76 -0.7
475,153 - EX28DRAFT_0486 0.82 +0.1
475,153 - EX28DRAFT_0486 0.82 +0.0
475,247 + -0.3
475,248 - +0.5
475,248 - -0.6
475,248 - +0.7
475,248 - +0.5
475,254 + +0.1
475,255 - -0.3
475,256 + +0.7
475,291 + +0.2
475,292 - +0.9
475,308 + +0.2
475,483 + +0.5
475,483 + -0.1
475,519 + -0.2
475,519 + +0.1
475,664 + EX28DRAFT_0487 0.12 -0.4
475,700 + EX28DRAFT_0487 0.13 +0.1
475,735 - EX28DRAFT_0487 0.14 +0.2
475,743 + EX28DRAFT_0487 0.14 +0.2
475,744 - EX28DRAFT_0487 0.14 +0.0
475,944 - EX28DRAFT_0487 0.20 +0.9
476,006 + EX28DRAFT_0487 0.22 -0.5
476,116 + EX28DRAFT_0487 0.25 -0.3
476,124 + EX28DRAFT_0487 0.25 +0.5
476,124 + EX28DRAFT_0487 0.25 -0.5
476,125 - EX28DRAFT_0487 0.26 +0.7
476,126 + EX28DRAFT_0487 0.26 -0.6
476,225 + EX28DRAFT_0487 0.29 +0.1
476,225 + EX28DRAFT_0487 0.29 +0.4
476,234 - EX28DRAFT_0487 0.29 -0.5
476,270 - EX28DRAFT_0487 0.30 -0.1
476,566 + EX28DRAFT_0487 0.39 +0.5
476,566 + EX28DRAFT_0487 0.39 +0.3
476,566 + EX28DRAFT_0487 0.39 -0.6
476,567 - EX28DRAFT_0487 0.39 -0.0
476,567 - EX28DRAFT_0487 0.39 -0.3
476,630 + EX28DRAFT_0487 0.41 +0.5
476,738 + EX28DRAFT_0487 0.44 -0.0
476,738 + EX28DRAFT_0487 0.44 -0.4
476,754 - EX28DRAFT_0487 0.44 +0.5
476,754 - EX28DRAFT_0487 0.44 +0.1
476,868 - EX28DRAFT_0487 0.48 +1.4
476,987 + EX28DRAFT_0487 0.51 +0.5
476,988 - EX28DRAFT_0487 0.51 -0.4
476,999 + EX28DRAFT_0487 0.52 -0.3
477,194 + EX28DRAFT_0487 0.58 +0.2
477,220 + EX28DRAFT_0487 0.58 -0.4
477,221 - EX28DRAFT_0487 0.58 -0.1
477,311 + EX28DRAFT_0487 0.61 +0.4
477,444 + EX28DRAFT_0487 0.65 +0.2
477,444 + EX28DRAFT_0487 0.65 +1.1
477,466 + EX28DRAFT_0487 0.66 +0.6
477,484 + EX28DRAFT_0487 0.66 -0.2
477,484 + EX28DRAFT_0487 0.66 -0.2
477,484 + EX28DRAFT_0487 0.66 +0.6
477,484 + EX28DRAFT_0487 0.66 +0.3
477,484 + EX28DRAFT_0487 0.66 +1.4
477,484 + EX28DRAFT_0487 0.66 +0.6
477,485 - EX28DRAFT_0487 0.66 +0.3
477,485 - EX28DRAFT_0487 0.66 +0.5
477,488 + EX28DRAFT_0487 0.66 +0.5
477,488 + EX28DRAFT_0487 0.66 +0.5
477,488 + EX28DRAFT_0487 0.66 -0.1
477,488 + EX28DRAFT_0487 0.66 +0.4
477,489 - EX28DRAFT_0487 0.66 -2.1
477,489 - EX28DRAFT_0487 0.66 +0.3
477,489 - EX28DRAFT_0487 0.66 -0.0
477,608 + EX28DRAFT_0487 0.70 -0.1
477,743 - EX28DRAFT_0487 0.74 -0.8
477,743 - EX28DRAFT_0487 0.74 +0.3
477,743 - EX28DRAFT_0487 0.74 +0.5
477,808 - EX28DRAFT_0487 0.76 +0.5
477,935 + EX28DRAFT_0487 0.80 -0.6
477,935 + EX28DRAFT_0487 0.80 -0.2
477,936 - EX28DRAFT_0487 0.80 -1.0
478,064 - EX28DRAFT_0487 0.84 +0.9
478,077 + EX28DRAFT_0487 0.84 +0.3
478,078 - EX28DRAFT_0487 0.84 +0.3
478,078 - EX28DRAFT_0487 0.84 -0.0
478,142 + EX28DRAFT_0487 0.86 +0.3
478,261 + EX28DRAFT_0487 0.90 +0.3
478,261 + EX28DRAFT_0487 0.90 +0.8
478,261 + EX28DRAFT_0487 0.90 +0.2
478,327 + +0.3
478,328 - +0.1
478,328 - +0.0
478,377 - -1.4
478,512 + +0.2
478,513 - +0.4
478,513 - +0.6
478,518 - -0.6
478,524 - +0.1
478,557 + -0.4
478,574 + -0.3
478,592 - -0.1
478,592 - +0.8
478,664 + -0.3
478,674 + +0.1
478,674 + +0.4
478,680 - -1.3
478,739 + +1.0
478,739 + +0.3
478,740 - -0.1
478,881 - -0.1
478,881 - +0.2
478,957 - -0.8
478,957 - -1.3
478,957 - +0.1
478,977 + +0.3
479,026 - EX28DRAFT_0488 0.12 -0.3
479,054 + EX28DRAFT_0488 0.17 +0.6
479,055 - EX28DRAFT_0488 0.17 +0.9
479,092 + EX28DRAFT_0488 0.22 -0.2
479,092 + EX28DRAFT_0488 0.22 -0.9
479,143 + EX28DRAFT_0488 0.30 -2.0
479,143 + EX28DRAFT_0488 0.30 +0.3
479,144 - EX28DRAFT_0488 0.31 -0.2
479,144 - EX28DRAFT_0488 0.31 -0.1
479,190 - EX28DRAFT_0488 0.38 -0.4
479,231 - EX28DRAFT_0488 0.44 +0.7
479,237 - EX28DRAFT_0488 0.45 +0.4
479,408 + EX28DRAFT_0488 0.72 +0.1
479,409 - EX28DRAFT_0488 0.72 -0.2
479,449 + EX28DRAFT_0488 0.78 -0.3
479,504 - EX28DRAFT_0488 0.87 -0.1
479,533 - +0.3
479,548 - -0.9
479,548 - +0.6
479,548 - +0.5
479,548 - -1.0
479,559 - -0.5
479,559 - -0.1

Or see this region's nucleotide sequence