Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0439 and EX28DRAFT_0440 are separated by 137 nucleotides EX28DRAFT_0440 and EX28DRAFT_0441 are separated by 94 nucleotides EX28DRAFT_0441 and EX28DRAFT_0442 overlap by 26 nucleotides
EX28DRAFT_0439: EX28DRAFT_0439 - methionyl-tRNA synthetase (EC 6.1.1.10), at 419,378 to 421,411
_0439
EX28DRAFT_0440: EX28DRAFT_0440 - ATPases involved in chromosome partitioning, at 421,549 to 422,658
_0440
EX28DRAFT_0441: EX28DRAFT_0441 - Acetyltransferases, at 422,753 to 423,208
_0441
EX28DRAFT_0442: EX28DRAFT_0442 - Predicted integral membrane protein, at 423,183 to 423,515
_0442
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 421.474 kb on - strand at 421.477 kb on + strand at 421.502 kb on + strand at 421.516 kb on + strand at 421.516 kb on + strand at 421.517 kb on - strand at 421.517 kb on - strand at 421.517 kb on - strand at 421.517 kb on - strand at 421.525 kb on - strand at 421.918 kb on - strand, within EX28DRAFT_0440 at 421.987 kb on + strand, within EX28DRAFT_0440 at 421.987 kb on + strand, within EX28DRAFT_0440 at 421.987 kb on + strand, within EX28DRAFT_0440 at 421.988 kb on - strand, within EX28DRAFT_0440 at 421.988 kb on - strand, within EX28DRAFT_0440 at 422.201 kb on - strand, within EX28DRAFT_0440 at 422.201 kb on - strand, within EX28DRAFT_0440 at 422.290 kb on - strand, within EX28DRAFT_0440 at 422.421 kb on + strand, within EX28DRAFT_0440 at 422.422 kb on - strand, within EX28DRAFT_0440 at 422.461 kb on + strand, within EX28DRAFT_0440 at 422.462 kb on - strand, within EX28DRAFT_0440 at 422.462 kb on - strand, within EX28DRAFT_0440 at 422.462 kb on - strand, within EX28DRAFT_0440 at 422.462 kb on - strand, within EX28DRAFT_0440 at 422.778 kb on + strand at 422.778 kb on + strand at 422.779 kb on - strand at 422.779 kb on - strand at 422.779 kb on - strand at 422.779 kb on - strand at 422.782 kb on - strand at 422.782 kb on - strand at 422.872 kb on + strand, within EX28DRAFT_0441 at 423.200 kb on + strand at 423.200 kb on + strand at 423.200 kb on + strand at 423.212 kb on - strand at 423.253 kb on + strand, within EX28DRAFT_0442 at 423.253 kb on + strand, within EX28DRAFT_0442 at 423.253 kb on + strand, within EX28DRAFT_0442 at 423.253 kb on + strand, within EX28DRAFT_0442 at 423.254 kb on - strand, within EX28DRAFT_0442 at 423.254 kb on - strand, within EX28DRAFT_0442 at 423.268 kb on + strand, within EX28DRAFT_0442 at 423.268 kb on + strand, within EX28DRAFT_0442 at 423.269 kb on - strand, within EX28DRAFT_0442 at 423.269 kb on - strand, within EX28DRAFT_0442 at 423.269 kb on - strand, within EX28DRAFT_0442 at 423.269 kb on - strand, within EX28DRAFT_0442 at 423.309 kb on + strand, within EX28DRAFT_0442 at 423.310 kb on - strand, within EX28DRAFT_0442 at 423.310 kb on - strand, within EX28DRAFT_0442 at 423.316 kb on + strand, within EX28DRAFT_0442 at 423.331 kb on + strand, within EX28DRAFT_0442 at 423.412 kb on + strand, within EX28DRAFT_0442 at 423.413 kb on - strand, within EX28DRAFT_0442 at 423.480 kb on + strand, within EX28DRAFT_0442 at 423.481 kb on - strand, within EX28DRAFT_0442 at 423.483 kb on + strand at 423.484 kb on - strand at 423.484 kb on - strand at 423.491 kb on + strand at 423.593 kb on - strand at 423.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 421,474 - -0.1 421,477 + -2.5 421,502 + +0.5 421,516 + +1.1 421,516 + +0.1 421,517 - -0.6 421,517 - -1.0 421,517 - -1.9 421,517 - +0.2 421,525 - -0.0 421,918 - EX28DRAFT_0440 0.33 -0.9 421,987 + EX28DRAFT_0440 0.39 -1.7 421,987 + EX28DRAFT_0440 0.39 -0.3 421,987 + EX28DRAFT_0440 0.39 -1.7 421,988 - EX28DRAFT_0440 0.40 -1.0 421,988 - EX28DRAFT_0440 0.40 -1.9 422,201 - EX28DRAFT_0440 0.59 -0.9 422,201 - EX28DRAFT_0440 0.59 -2.4 422,290 - EX28DRAFT_0440 0.67 -1.1 422,421 + EX28DRAFT_0440 0.79 -0.0 422,422 - EX28DRAFT_0440 0.79 -1.1 422,461 + EX28DRAFT_0440 0.82 -0.8 422,462 - EX28DRAFT_0440 0.82 -2.7 422,462 - EX28DRAFT_0440 0.82 -0.9 422,462 - EX28DRAFT_0440 0.82 -0.6 422,462 - EX28DRAFT_0440 0.82 -0.5 422,778 + -0.6 422,778 + -0.4 422,779 - +0.2 422,779 - -0.5 422,779 - -1.5 422,779 - +0.3 422,782 - -0.0 422,782 - +0.9 422,872 + EX28DRAFT_0441 0.26 +0.4 423,200 + +0.3 423,200 + +0.5 423,200 + +0.1 423,212 - -0.6 423,253 + EX28DRAFT_0442 0.21 +0.9 423,253 + EX28DRAFT_0442 0.21 -0.2 423,253 + EX28DRAFT_0442 0.21 -0.3 423,253 + EX28DRAFT_0442 0.21 +0.2 423,254 - EX28DRAFT_0442 0.21 -0.4 423,254 - EX28DRAFT_0442 0.21 +0.1 423,268 + EX28DRAFT_0442 0.26 +0.4 423,268 + EX28DRAFT_0442 0.26 -1.2 423,269 - EX28DRAFT_0442 0.26 -0.3 423,269 - EX28DRAFT_0442 0.26 +0.3 423,269 - EX28DRAFT_0442 0.26 +0.6 423,269 - EX28DRAFT_0442 0.26 +0.5 423,309 + EX28DRAFT_0442 0.38 +0.7 423,310 - EX28DRAFT_0442 0.38 -1.2 423,310 - EX28DRAFT_0442 0.38 -0.6 423,316 + EX28DRAFT_0442 0.40 -0.2 423,331 + EX28DRAFT_0442 0.44 -0.0 423,412 + EX28DRAFT_0442 0.69 -0.2 423,413 - EX28DRAFT_0442 0.69 -0.2 423,480 + EX28DRAFT_0442 0.89 +1.9 423,481 - EX28DRAFT_0442 0.89 -0.6 423,483 + +0.1 423,484 - -0.5 423,484 - +0.0 423,491 + -1.3 423,593 - -0.8 423,606 - +0.1
Or see this region's nucleotide sequence