Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0350

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0349 and EX28DRAFT_0350 are separated by 252 nucleotidesEX28DRAFT_0350 and EX28DRAFT_0351 are separated by 11 nucleotides EX28DRAFT_0349: EX28DRAFT_0349 - glycerol-3-phosphate dehydrogenase, anaerobic, A subunit, at 312,005 to 313,633 _0349 EX28DRAFT_0350: EX28DRAFT_0350 - glycerol-3-phosphate transporter, at 313,886 to 315,238 _0350 EX28DRAFT_0351: EX28DRAFT_0351 - Glycerophosphoryl diester phosphodiesterase, at 315,250 to 316,308 _0351 Position (kb) 313 314 315 316Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 313.052 kb on - strand, within EX28DRAFT_0349at 313.053 kb on + strand, within EX28DRAFT_0349at 313.053 kb on + strand, within EX28DRAFT_0349at 313.053 kb on + strand, within EX28DRAFT_0349at 313.301 kb on - strand, within EX28DRAFT_0349at 313.313 kb on - strand, within EX28DRAFT_0349at 313.313 kb on - strand, within EX28DRAFT_0349at 313.351 kb on + strand, within EX28DRAFT_0349at 313.354 kb on + strand, within EX28DRAFT_0349at 313.354 kb on + strand, within EX28DRAFT_0349at 313.421 kb on - strand, within EX28DRAFT_0349at 313.538 kb on + strandat 313.679 kb on - strandat 313.817 kb on + strandat 313.885 kb on + strandat 313.886 kb on - strandat 313.894 kb on + strandat 313.952 kb on + strandat 314.007 kb on - strandat 314.009 kb on + strandat 314.010 kb on - strandat 314.010 kb on - strandat 314.016 kb on + strandat 314.046 kb on - strand, within EX28DRAFT_0350at 314.242 kb on + strand, within EX28DRAFT_0350at 314.243 kb on - strand, within EX28DRAFT_0350at 314.252 kb on - strand, within EX28DRAFT_0350at 314.252 kb on - strand, within EX28DRAFT_0350at 314.252 kb on - strand, within EX28DRAFT_0350at 314.456 kb on + strand, within EX28DRAFT_0350at 314.456 kb on + strand, within EX28DRAFT_0350at 314.457 kb on - strand, within EX28DRAFT_0350at 314.457 kb on - strand, within EX28DRAFT_0350at 314.457 kb on - strand, within EX28DRAFT_0350at 314.457 kb on - strand, within EX28DRAFT_0350at 314.457 kb on - strand, within EX28DRAFT_0350at 314.458 kb on + strand, within EX28DRAFT_0350at 314.459 kb on - strand, within EX28DRAFT_0350at 314.459 kb on - strand, within EX28DRAFT_0350at 314.576 kb on + strand, within EX28DRAFT_0350at 314.628 kb on - strand, within EX28DRAFT_0350at 314.682 kb on - strand, within EX28DRAFT_0350at 314.777 kb on + strand, within EX28DRAFT_0350at 314.777 kb on + strand, within EX28DRAFT_0350at 314.783 kb on + strand, within EX28DRAFT_0350at 314.784 kb on - strand, within EX28DRAFT_0350at 314.869 kb on + strand, within EX28DRAFT_0350at 314.869 kb on + strand, within EX28DRAFT_0350at 314.870 kb on - strand, within EX28DRAFT_0350at 314.932 kb on - strand, within EX28DRAFT_0350at 314.969 kb on + strand, within EX28DRAFT_0350at 314.969 kb on + strand, within EX28DRAFT_0350at 315.102 kb on - strand, within EX28DRAFT_0350at 315.108 kb on + strandat 315.108 kb on + strandat 315.109 kb on - strandat 315.169 kb on - strandat 315.236 kb on + strandat 315.262 kb on + strandat 315.262 kb on + strandat 315.262 kb on + strandat 315.263 kb on - strandat 315.266 kb on + strandat 315.267 kb on - strandat 315.331 kb on - strandat 315.369 kb on + strand, within EX28DRAFT_0351at 315.369 kb on + strand, within EX28DRAFT_0351at 315.412 kb on + strand, within EX28DRAFT_0351at 315.412 kb on + strand, within EX28DRAFT_0351at 315.472 kb on + strand, within EX28DRAFT_0351at 315.473 kb on - strand, within EX28DRAFT_0351at 315.670 kb on - strand, within EX28DRAFT_0351at 315.943 kb on + strand, within EX28DRAFT_0351at 315.998 kb on - strand, within EX28DRAFT_0351at 316.004 kb on - strand, within EX28DRAFT_0351at 316.199 kb on - strand, within EX28DRAFT_0351at 316.222 kb on + strandat 316.222 kb on + strandat 316.235 kb on - strandat 316.237 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
313,052 - EX28DRAFT_0349 0.64 -1.8
313,053 + EX28DRAFT_0349 0.64 +0.3
313,053 + EX28DRAFT_0349 0.64 -0.2
313,053 + EX28DRAFT_0349 0.64 -1.3
313,301 - EX28DRAFT_0349 0.80 -0.6
313,313 - EX28DRAFT_0349 0.80 -1.9
313,313 - EX28DRAFT_0349 0.80 +0.6
313,351 + EX28DRAFT_0349 0.83 -1.4
313,354 + EX28DRAFT_0349 0.83 -1.7
313,354 + EX28DRAFT_0349 0.83 -1.6
313,421 - EX28DRAFT_0349 0.87 -1.2
313,538 + -2.7
313,679 - -0.7
313,817 + -3.3
313,885 + +2.9
313,886 - +2.4
313,894 + +2.9
313,952 + +2.3
314,007 - +2.5
314,009 + +3.1
314,010 - +2.9
314,010 - +3.2
314,016 + +3.0
314,046 - EX28DRAFT_0350 0.12 +3.1
314,242 + EX28DRAFT_0350 0.26 +3.5
314,243 - EX28DRAFT_0350 0.26 +3.1
314,252 - EX28DRAFT_0350 0.27 +3.4
314,252 - EX28DRAFT_0350 0.27 +3.7
314,252 - EX28DRAFT_0350 0.27 +3.0
314,456 + EX28DRAFT_0350 0.42 +3.4
314,456 + EX28DRAFT_0350 0.42 +3.0
314,457 - EX28DRAFT_0350 0.42 +3.0
314,457 - EX28DRAFT_0350 0.42 +3.4
314,457 - EX28DRAFT_0350 0.42 +3.2
314,457 - EX28DRAFT_0350 0.42 +3.2
314,457 - EX28DRAFT_0350 0.42 +2.9
314,458 + EX28DRAFT_0350 0.42 +3.2
314,459 - EX28DRAFT_0350 0.42 +3.9
314,459 - EX28DRAFT_0350 0.42 +2.8
314,576 + EX28DRAFT_0350 0.51 +3.2
314,628 - EX28DRAFT_0350 0.55 +3.0
314,682 - EX28DRAFT_0350 0.59 +2.9
314,777 + EX28DRAFT_0350 0.66 +3.1
314,777 + EX28DRAFT_0350 0.66 +3.2
314,783 + EX28DRAFT_0350 0.66 +5.7
314,784 - EX28DRAFT_0350 0.66 +3.2
314,869 + EX28DRAFT_0350 0.73 +2.7
314,869 + EX28DRAFT_0350 0.73 +3.4
314,870 - EX28DRAFT_0350 0.73 +2.4
314,932 - EX28DRAFT_0350 0.77 +3.3
314,969 + EX28DRAFT_0350 0.80 +3.3
314,969 + EX28DRAFT_0350 0.80 +3.1
315,102 - EX28DRAFT_0350 0.90 +2.5
315,108 + +3.0
315,108 + +2.6
315,109 - +3.9
315,169 - +3.1
315,236 + +1.3
315,262 + +1.4
315,262 + +2.6
315,262 + +1.8
315,263 - -0.2
315,266 + +1.9
315,267 - +0.5
315,331 - +1.9
315,369 + EX28DRAFT_0351 0.11 +0.9
315,369 + EX28DRAFT_0351 0.11 +1.2
315,412 + EX28DRAFT_0351 0.15 +2.5
315,412 + EX28DRAFT_0351 0.15 +1.8
315,472 + EX28DRAFT_0351 0.21 +0.5
315,473 - EX28DRAFT_0351 0.21 -0.1
315,670 - EX28DRAFT_0351 0.40 +0.7
315,943 + EX28DRAFT_0351 0.65 +0.6
315,998 - EX28DRAFT_0351 0.71 +0.6
316,004 - EX28DRAFT_0351 0.71 +0.6
316,199 - EX28DRAFT_0351 0.90 +0.4
316,222 + -0.4
316,222 + -0.3
316,235 - +0.8
316,237 - +1.3

Or see this region's nucleotide sequence