Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0303

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0301 and EX28DRAFT_0302 are separated by 75 nucleotidesEX28DRAFT_0302 and EX28DRAFT_0303 are separated by 140 nucleotidesEX28DRAFT_0303 and EX28DRAFT_0304 are separated by 56 nucleotidesEX28DRAFT_0304 and EX28DRAFT_0305 are separated by 55 nucleotides EX28DRAFT_0301: EX28DRAFT_0301 - FolB domain, at 262,352 to 262,720 _0301 EX28DRAFT_0302: EX28DRAFT_0302 - Glutathione S-transferase, at 262,796 to 263,425 _0302 EX28DRAFT_0303: EX28DRAFT_0303 - Glutathione S-transferase, at 263,566 to 264,210 _0303 EX28DRAFT_0304: EX28DRAFT_0304 - phosphoesterase, MJ0936 family, at 264,267 to 264,818 _0304 EX28DRAFT_0305: EX28DRAFT_0305 - Isopentenyldiphosphate isomerase, at 264,874 to 265,428 _0305 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2at 262.699 kb on + strandat 262.742 kb on + strandat 262.758 kb on + strandat 262.758 kb on + strandat 262.759 kb on - strandat 262.759 kb on - strandat 262.950 kb on + strand, within EX28DRAFT_0302at 263.005 kb on - strand, within EX28DRAFT_0302at 263.194 kb on - strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.328 kb on - strand, within EX28DRAFT_0302at 263.328 kb on - strand, within EX28DRAFT_0302at 263.329 kb on + strand, within EX28DRAFT_0302at 263.329 kb on + strand, within EX28DRAFT_0302at 263.330 kb on - strand, within EX28DRAFT_0302at 263.330 kb on - strand, within EX28DRAFT_0302at 263.330 kb on - strand, within EX28DRAFT_0302at 263.387 kb on - strandat 263.387 kb on - strandat 263.471 kb on - strandat 263.473 kb on - strandat 263.473 kb on - strandat 263.473 kb on - strandat 263.473 kb on - strandat 263.527 kb on + strandat 263.527 kb on + strandat 263.527 kb on + strandat 263.529 kb on + strandat 263.529 kb on + strandat 263.529 kb on + strandat 263.529 kb on + strandat 263.530 kb on - strandat 263.530 kb on - strandat 263.530 kb on - strandat 263.555 kb on - strandat 263.566 kb on - strandat 263.617 kb on + strandat 263.617 kb on + strandat 263.618 kb on - strandat 263.622 kb on + strandat 263.622 kb on + strandat 263.623 kb on - strandat 263.630 kb on + strandat 263.630 kb on + strandat 263.630 kb on + strandat 263.630 kb on + strandat 263.631 kb on - strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.633 kb on - strand, within EX28DRAFT_0303at 263.797 kb on + strand, within EX28DRAFT_0303at 263.840 kb on - strand, within EX28DRAFT_0303at 264.139 kb on + strand, within EX28DRAFT_0303at 264.178 kb on + strandat 264.178 kb on + strandat 264.178 kb on + strandat 264.178 kb on + strandat 264.178 kb on + strandat 264.179 kb on - strandat 264.211 kb on + strandat 264.212 kb on - strandat 264.231 kb on - strandat 264.363 kb on - strand, within EX28DRAFT_0304at 264.644 kb on + strand, within EX28DRAFT_0304at 264.644 kb on + strand, within EX28DRAFT_0304at 264.645 kb on - strand, within EX28DRAFT_0304at 264.645 kb on - strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.710 kb on - strand, within EX28DRAFT_0304at 264.710 kb on - strand, within EX28DRAFT_0304at 264.713 kb on + strand, within EX28DRAFT_0304at 264.713 kb on + strand, within EX28DRAFT_0304at 264.714 kb on - strand, within EX28DRAFT_0304at 264.735 kb on + strand, within EX28DRAFT_0304at 264.736 kb on - strand, within EX28DRAFT_0304at 264.755 kb on + strand, within EX28DRAFT_0304at 264.755 kb on + strand, within EX28DRAFT_0304at 264.756 kb on - strand, within EX28DRAFT_0304at 264.777 kb on - strandat 264.817 kb on - strandat 264.821 kb on + strandat 264.821 kb on + strandat 264.856 kb on - strandat 264.901 kb on - strandat 264.998 kb on - strand, within EX28DRAFT_0305at 264.998 kb on - strand, within EX28DRAFT_0305at 264.998 kb on - strand, within EX28DRAFT_0305at 265.018 kb on - strand, within EX28DRAFT_0305at 265.154 kb on + strand, within EX28DRAFT_0305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
262,699 + -0.1
262,742 + -0.2
262,758 + -0.6
262,758 + -0.1
262,759 - +0.6
262,759 - -0.5
262,950 + EX28DRAFT_0302 0.24 -0.6
263,005 - EX28DRAFT_0302 0.33 +0.2
263,194 - EX28DRAFT_0302 0.63 +1.3
263,327 + EX28DRAFT_0302 0.84 -0.6
263,327 + EX28DRAFT_0302 0.84 +0.7
263,327 + EX28DRAFT_0302 0.84 +0.2
263,327 + EX28DRAFT_0302 0.84 +0.3
263,328 - EX28DRAFT_0302 0.84 -0.2
263,328 - EX28DRAFT_0302 0.84 +0.1
263,329 + EX28DRAFT_0302 0.85 +0.3
263,329 + EX28DRAFT_0302 0.85 -0.4
263,330 - EX28DRAFT_0302 0.85 -0.1
263,330 - EX28DRAFT_0302 0.85 -0.1
263,330 - EX28DRAFT_0302 0.85 -0.7
263,387 - +0.0
263,387 - -0.4
263,471 - +1.9
263,473 - +0.4
263,473 - +0.0
263,473 - +0.1
263,473 - +0.3
263,527 + -1.0
263,527 + -0.1
263,527 + -0.1
263,529 + +0.4
263,529 + -0.2
263,529 + +0.1
263,529 + -1.3
263,530 - +0.3
263,530 - -0.3
263,530 - -0.5
263,555 - +0.0
263,566 - -0.2
263,617 + +0.2
263,617 + -0.3
263,618 - -0.7
263,622 + -0.3
263,622 + -0.1
263,623 - +0.3
263,630 + +0.1
263,630 + -0.2
263,630 + -0.0
263,630 + +0.5
263,631 - EX28DRAFT_0303 0.10 -0.9
263,632 + EX28DRAFT_0303 0.10 -0.5
263,632 + EX28DRAFT_0303 0.10 -0.3
263,632 + EX28DRAFT_0303 0.10 +0.1
263,632 + EX28DRAFT_0303 0.10 -0.8
263,633 - EX28DRAFT_0303 0.10 -0.1
263,797 + EX28DRAFT_0303 0.36 +0.4
263,840 - EX28DRAFT_0303 0.42 -0.0
264,139 + EX28DRAFT_0303 0.89 -0.4
264,178 + +0.2
264,178 + -0.1
264,178 + +0.2
264,178 + -0.0
264,178 + +0.0
264,179 - +0.1
264,211 + +0.1
264,212 - -0.4
264,231 - +0.3
264,363 - EX28DRAFT_0304 0.17 -0.5
264,644 + EX28DRAFT_0304 0.68 -0.1
264,644 + EX28DRAFT_0304 0.68 -0.2
264,645 - EX28DRAFT_0304 0.68 +0.8
264,645 - EX28DRAFT_0304 0.68 -0.9
264,709 + EX28DRAFT_0304 0.80 -0.0
264,709 + EX28DRAFT_0304 0.80 +0.5
264,709 + EX28DRAFT_0304 0.80 -0.6
264,710 - EX28DRAFT_0304 0.80 +0.8
264,710 - EX28DRAFT_0304 0.80 -0.2
264,713 + EX28DRAFT_0304 0.81 +0.9
264,713 + EX28DRAFT_0304 0.81 -0.1
264,714 - EX28DRAFT_0304 0.81 -1.2
264,735 + EX28DRAFT_0304 0.85 +1.1
264,736 - EX28DRAFT_0304 0.85 +0.1
264,755 + EX28DRAFT_0304 0.88 -0.5
264,755 + EX28DRAFT_0304 0.88 -0.3
264,756 - EX28DRAFT_0304 0.89 -0.3
264,777 - +0.3
264,817 - +0.2
264,821 + -0.4
264,821 + -0.1
264,856 - -0.2
264,901 - +0.6
264,998 - EX28DRAFT_0305 0.22 -1.2
264,998 - EX28DRAFT_0305 0.22 -0.7
264,998 - EX28DRAFT_0305 0.22 -0.5
265,018 - EX28DRAFT_0305 0.26 -1.8
265,154 + EX28DRAFT_0305 0.50 +0.1

Or see this region's nucleotide sequence