Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0241 and EX28DRAFT_0242 are separated by 786 nucleotides EX28DRAFT_0242 and EX28DRAFT_0243 are separated by 38 nucleotides
EX28DRAFT_0241: EX28DRAFT_0241 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 194,832 to 195,749
_0241
EX28DRAFT_0242: EX28DRAFT_0242 - type VI secretion protein, VC_A0107 family, at 196,536 to 197,033
_0242
EX28DRAFT_0243: EX28DRAFT_0243 - type VI secretion protein, EvpB/VC_A0108 family, at 197,072 to 198,610
_0243
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1 at 195.545 kb on - strand, within EX28DRAFT_0241 at 195.679 kb on - strand at 195.698 kb on + strand at 195.698 kb on + strand at 195.699 kb on - strand at 195.756 kb on - strand at 195.763 kb on - strand at 195.763 kb on - strand at 195.775 kb on + strand at 195.782 kb on - strand at 195.900 kb on + strand at 195.901 kb on - strand at 195.911 kb on + strand at 195.912 kb on - strand at 195.916 kb on + strand at 195.924 kb on - strand at 195.924 kb on - strand at 196.445 kb on + strand at 196.595 kb on - strand, within EX28DRAFT_0242 at 196.806 kb on - strand, within EX28DRAFT_0242 at 196.919 kb on + strand, within EX28DRAFT_0242 at 197.079 kb on + strand at 197.080 kb on - strand at 197.141 kb on + strand at 197.142 kb on - strand at 197.196 kb on + strand at 197.446 kb on + strand, within EX28DRAFT_0243 at 197.488 kb on + strand, within EX28DRAFT_0243 at 197.489 kb on - strand, within EX28DRAFT_0243 at 197.565 kb on - strand, within EX28DRAFT_0243 at 197.565 kb on - strand, within EX28DRAFT_0243 at 197.565 kb on - strand, within EX28DRAFT_0243 at 197.565 kb on - strand, within EX28DRAFT_0243 at 197.577 kb on - strand, within EX28DRAFT_0243 at 197.577 kb on - strand, within EX28DRAFT_0243 at 197.581 kb on + strand, within EX28DRAFT_0243 at 197.692 kb on + strand, within EX28DRAFT_0243 at 197.692 kb on + strand, within EX28DRAFT_0243 at 197.692 kb on + strand, within EX28DRAFT_0243 at 197.693 kb on - strand, within EX28DRAFT_0243 at 197.693 kb on - strand, within EX28DRAFT_0243 at 197.767 kb on + strand, within EX28DRAFT_0243 at 197.768 kb on - strand, within EX28DRAFT_0243 at 197.768 kb on - strand, within EX28DRAFT_0243 at 197.778 kb on - strand, within EX28DRAFT_0243 at 197.778 kb on - strand, within EX28DRAFT_0243 at 197.778 kb on - strand, within EX28DRAFT_0243 at 197.796 kb on - strand, within EX28DRAFT_0243 at 197.837 kb on + strand, within EX28DRAFT_0243 at 197.915 kb on + strand, within EX28DRAFT_0243 at 197.915 kb on + strand, within EX28DRAFT_0243 at 197.915 kb on + strand, within EX28DRAFT_0243 at 197.915 kb on + strand, within EX28DRAFT_0243 at 197.916 kb on - strand, within EX28DRAFT_0243 at 197.916 kb on - strand, within EX28DRAFT_0243 at 197.916 kb on - strand, within EX28DRAFT_0243 at 197.952 kb on - strand, within EX28DRAFT_0243 at 197.952 kb on - strand, within EX28DRAFT_0243 at 197.962 kb on + strand, within EX28DRAFT_0243 at 197.962 kb on + strand, within EX28DRAFT_0243 at 197.963 kb on - strand, within EX28DRAFT_0243 at 197.998 kb on + strand, within EX28DRAFT_0243 at 197.999 kb on - strand, within EX28DRAFT_0243
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 195,545 - EX28DRAFT_0241 0.78 -0.4 195,679 - +0.1 195,698 + +0.4 195,698 + +0.4 195,699 - +0.1 195,756 - +0.4 195,763 - +1.6 195,763 - -0.8 195,775 + +0.1 195,782 - -0.5 195,900 + -0.8 195,901 - +0.3 195,911 + +0.2 195,912 - +0.9 195,916 + +0.5 195,924 - +0.6 195,924 - -0.6 196,445 + -0.6 196,595 - EX28DRAFT_0242 0.12 -0.5 196,806 - EX28DRAFT_0242 0.54 -0.8 196,919 + EX28DRAFT_0242 0.77 -0.2 197,079 + +0.1 197,080 - +0.5 197,141 + -0.2 197,142 - -0.2 197,196 + -0.4 197,446 + EX28DRAFT_0243 0.24 -0.9 197,488 + EX28DRAFT_0243 0.27 +0.0 197,489 - EX28DRAFT_0243 0.27 +0.3 197,565 - EX28DRAFT_0243 0.32 +0.4 197,565 - EX28DRAFT_0243 0.32 -0.8 197,565 - EX28DRAFT_0243 0.32 -0.0 197,565 - EX28DRAFT_0243 0.32 -1.4 197,577 - EX28DRAFT_0243 0.33 -0.8 197,577 - EX28DRAFT_0243 0.33 +0.4 197,581 + EX28DRAFT_0243 0.33 +0.3 197,692 + EX28DRAFT_0243 0.40 +1.1 197,692 + EX28DRAFT_0243 0.40 +0.5 197,692 + EX28DRAFT_0243 0.40 -0.1 197,693 - EX28DRAFT_0243 0.40 -0.1 197,693 - EX28DRAFT_0243 0.40 +0.4 197,767 + EX28DRAFT_0243 0.45 +0.1 197,768 - EX28DRAFT_0243 0.45 +1.2 197,768 - EX28DRAFT_0243 0.45 +0.5 197,778 - EX28DRAFT_0243 0.46 +0.1 197,778 - EX28DRAFT_0243 0.46 +0.1 197,778 - EX28DRAFT_0243 0.46 +0.3 197,796 - EX28DRAFT_0243 0.47 +0.0 197,837 + EX28DRAFT_0243 0.50 -0.2 197,915 + EX28DRAFT_0243 0.55 -0.9 197,915 + EX28DRAFT_0243 0.55 -0.0 197,915 + EX28DRAFT_0243 0.55 +0.1 197,915 + EX28DRAFT_0243 0.55 -1.1 197,916 - EX28DRAFT_0243 0.55 -0.2 197,916 - EX28DRAFT_0243 0.55 +0.8 197,916 - EX28DRAFT_0243 0.55 -0.2 197,952 - EX28DRAFT_0243 0.57 -0.1 197,952 - EX28DRAFT_0243 0.57 -0.0 197,962 + EX28DRAFT_0243 0.58 -0.6 197,962 + EX28DRAFT_0243 0.58 +0.5 197,963 - EX28DRAFT_0243 0.58 -0.0 197,998 + EX28DRAFT_0243 0.60 +1.1 197,999 - EX28DRAFT_0243 0.60 -0.5
Or see this region's nucleotide sequence