Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0179

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0178 and EX28DRAFT_0179 are separated by 221 nucleotidesEX28DRAFT_0179 and EX28DRAFT_0180 are separated by 95 nucleotidesEX28DRAFT_0180 and EX28DRAFT_0181 overlap by 1 nucleotides EX28DRAFT_0178: EX28DRAFT_0178 - Putative Zn-dependent protease, contains TPR repeats, at 127,536 to 128,999 _0178 EX28DRAFT_0179: EX28DRAFT_0179 - Predicted permease, at 129,221 to 130,285 _0179 EX28DRAFT_0180: EX28DRAFT_0180 - Peroxiredoxin, at 130,381 to 130,851 _0180 EX28DRAFT_0181: EX28DRAFT_0181 - Glycine cleavage system regulatory protein, at 130,851 to 131,420 _0181 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1at 128.296 kb on + strand, within EX28DRAFT_0178at 128.296 kb on + strand, within EX28DRAFT_0178at 128.702 kb on + strand, within EX28DRAFT_0178at 128.777 kb on - strand, within EX28DRAFT_0178at 128.777 kb on - strand, within EX28DRAFT_0178at 128.781 kb on + strand, within EX28DRAFT_0178at 128.782 kb on - strand, within EX28DRAFT_0178at 128.833 kb on + strand, within EX28DRAFT_0178at 128.833 kb on + strand, within EX28DRAFT_0178at 128.833 kb on + strand, within EX28DRAFT_0178at 128.834 kb on - strand, within EX28DRAFT_0178at 128.836 kb on + strand, within EX28DRAFT_0178at 129.000 kb on - strandat 129.014 kb on - strandat 129.014 kb on - strandat 129.014 kb on - strandat 129.027 kb on + strandat 129.079 kb on - strandat 129.088 kb on - strandat 129.088 kb on - strandat 129.170 kb on + strandat 129.170 kb on + strandat 129.171 kb on - strandat 129.220 kb on + strandat 129.220 kb on + strandat 129.221 kb on - strandat 129.221 kb on - strandat 129.221 kb on - strandat 129.235 kb on - strandat 129.369 kb on - strand, within EX28DRAFT_0179at 129.369 kb on - strand, within EX28DRAFT_0179at 129.438 kb on + strand, within EX28DRAFT_0179at 129.671 kb on + strand, within EX28DRAFT_0179at 129.672 kb on - strand, within EX28DRAFT_0179at 129.714 kb on - strand, within EX28DRAFT_0179at 129.714 kb on - strand, within EX28DRAFT_0179at 129.714 kb on - strand, within EX28DRAFT_0179at 129.854 kb on + strand, within EX28DRAFT_0179at 129.855 kb on - strand, within EX28DRAFT_0179at 129.855 kb on - strand, within EX28DRAFT_0179at 129.855 kb on - strand, within EX28DRAFT_0179at 130.074 kb on - strand, within EX28DRAFT_0179at 130.082 kb on - strand, within EX28DRAFT_0179at 130.156 kb on + strand, within EX28DRAFT_0179at 130.157 kb on - strand, within EX28DRAFT_0179at 130.283 kb on + strandat 130.283 kb on + strandat 130.498 kb on - strand, within EX28DRAFT_0180at 130.555 kb on + strand, within EX28DRAFT_0180at 130.853 kb on - strandat 130.896 kb on + strandat 130.899 kb on - strandat 130.986 kb on - strand, within EX28DRAFT_0181at 131.055 kb on - strand, within EX28DRAFT_0181at 131.128 kb on - strand, within EX28DRAFT_0181at 131.268 kb on - strand, within EX28DRAFT_0181at 131.268 kb on - strand, within EX28DRAFT_0181at 131.270 kb on + strand, within EX28DRAFT_0181at 131.271 kb on - strand, within EX28DRAFT_0181

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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128,296 + EX28DRAFT_0178 0.52 +0.0
128,296 + EX28DRAFT_0178 0.52 +0.2
128,702 + EX28DRAFT_0178 0.80 -0.3
128,777 - EX28DRAFT_0178 0.85 -0.9
128,777 - EX28DRAFT_0178 0.85 -0.8
128,781 + EX28DRAFT_0178 0.85 -0.3
128,782 - EX28DRAFT_0178 0.85 +0.2
128,833 + EX28DRAFT_0178 0.89 -0.9
128,833 + EX28DRAFT_0178 0.89 +0.1
128,833 + EX28DRAFT_0178 0.89 -0.6
128,834 - EX28DRAFT_0178 0.89 +0.3
128,836 + EX28DRAFT_0178 0.89 -1.0
129,000 - +0.1
129,014 - +0.3
129,014 - +0.1
129,014 - -0.3
129,027 + -1.4
129,079 - +1.6
129,088 - -0.2
129,088 - +0.6
129,170 + -1.5
129,170 + +0.1
129,171 - +0.4
129,220 + +0.3
129,220 + +0.3
129,221 - +0.5
129,221 - -0.1
129,221 - +0.2
129,235 - -0.7
129,369 - EX28DRAFT_0179 0.14 +0.3
129,369 - EX28DRAFT_0179 0.14 +0.4
129,438 + EX28DRAFT_0179 0.20 +1.1
129,671 + EX28DRAFT_0179 0.42 -0.3
129,672 - EX28DRAFT_0179 0.42 +1.2
129,714 - EX28DRAFT_0179 0.46 +0.5
129,714 - EX28DRAFT_0179 0.46 +0.5
129,714 - EX28DRAFT_0179 0.46 +0.6
129,854 + EX28DRAFT_0179 0.59 +0.4
129,855 - EX28DRAFT_0179 0.60 +1.2
129,855 - EX28DRAFT_0179 0.60 +0.7
129,855 - EX28DRAFT_0179 0.60 +0.0
130,074 - EX28DRAFT_0179 0.80 +0.6
130,082 - EX28DRAFT_0179 0.81 +0.7
130,156 + EX28DRAFT_0179 0.88 +0.1
130,157 - EX28DRAFT_0179 0.88 +1.0
130,283 + +0.4
130,283 + -0.3
130,498 - EX28DRAFT_0180 0.25 -0.1
130,555 + EX28DRAFT_0180 0.37 -0.9
130,853 - -1.2
130,896 + -0.3
130,899 - -0.4
130,986 - EX28DRAFT_0181 0.24 -0.4
131,055 - EX28DRAFT_0181 0.36 -0.8
131,128 - EX28DRAFT_0181 0.49 -1.8
131,268 - EX28DRAFT_0181 0.73 -0.6
131,268 - EX28DRAFT_0181 0.73 -1.1
131,270 + EX28DRAFT_0181 0.74 -0.6
131,271 - EX28DRAFT_0181 0.74 +0.4

Or see this region's nucleotide sequence