Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0166

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0165 and EX28DRAFT_0166 are separated by 3 nucleotidesEX28DRAFT_0166 and EX28DRAFT_0167 are separated by 207 nucleotidesEX28DRAFT_0167 and EX28DRAFT_0168 overlap by 4 nucleotides EX28DRAFT_0165: EX28DRAFT_0165 - exopolyphosphatase, at 112,247 to 113,785 _0165 EX28DRAFT_0166: EX28DRAFT_0166 - polyphosphate kinase 1, at 113,789 to 115,849 _0166 EX28DRAFT_0167: EX28DRAFT_0167 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 116,057 to 116,698 _0167 EX28DRAFT_0168: EX28DRAFT_0168 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 116,695 to 117,732 _0168 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 112.809 kb on + strand, within EX28DRAFT_0165at 112.926 kb on - strand, within EX28DRAFT_0165at 113.030 kb on - strand, within EX28DRAFT_0165at 113.259 kb on + strand, within EX28DRAFT_0165at 113.589 kb on - strand, within EX28DRAFT_0165at 113.770 kb on + strandat 113.786 kb on - strandat 113.823 kb on + strandat 113.898 kb on + strandat 113.899 kb on - strandat 113.899 kb on - strandat 113.899 kb on - strandat 114.036 kb on + strand, within EX28DRAFT_0166at 114.036 kb on + strand, within EX28DRAFT_0166at 114.037 kb on - strand, within EX28DRAFT_0166at 114.037 kb on - strand, within EX28DRAFT_0166at 114.046 kb on + strand, within EX28DRAFT_0166at 114.067 kb on + strand, within EX28DRAFT_0166at 114.068 kb on - strand, within EX28DRAFT_0166at 114.208 kb on - strand, within EX28DRAFT_0166at 114.208 kb on - strand, within EX28DRAFT_0166at 114.313 kb on - strand, within EX28DRAFT_0166at 114.453 kb on + strand, within EX28DRAFT_0166at 114.454 kb on - strand, within EX28DRAFT_0166at 114.735 kb on + strand, within EX28DRAFT_0166at 114.825 kb on + strand, within EX28DRAFT_0166at 114.825 kb on + strand, within EX28DRAFT_0166at 114.825 kb on + strand, within EX28DRAFT_0166at 114.825 kb on + strand, within EX28DRAFT_0166at 114.826 kb on - strand, within EX28DRAFT_0166at 114.826 kb on - strand, within EX28DRAFT_0166at 114.949 kb on + strand, within EX28DRAFT_0166at 115.015 kb on + strand, within EX28DRAFT_0166at 115.153 kb on - strand, within EX28DRAFT_0166at 115.249 kb on + strand, within EX28DRAFT_0166at 115.389 kb on + strand, within EX28DRAFT_0166at 115.389 kb on + strand, within EX28DRAFT_0166at 115.390 kb on - strand, within EX28DRAFT_0166at 115.444 kb on + strand, within EX28DRAFT_0166at 115.462 kb on - strand, within EX28DRAFT_0166at 115.462 kb on - strand, within EX28DRAFT_0166at 115.567 kb on - strand, within EX28DRAFT_0166at 115.644 kb on - strandat 115.701 kb on + strandat 115.702 kb on - strandat 115.726 kb on - strandat 115.787 kb on + strandat 115.788 kb on - strandat 115.798 kb on + strandat 115.814 kb on + strandat 115.814 kb on + strandat 115.828 kb on + strandat 115.830 kb on + strandat 115.831 kb on - strandat 115.885 kb on + strandat 115.886 kb on - strandat 115.886 kb on - strandat 115.903 kb on - strandat 115.925 kb on + strandat 115.925 kb on + strandat 115.926 kb on - strandat 115.926 kb on - strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.016 kb on - strandat 116.051 kb on - strandat 116.051 kb on - strandat 116.058 kb on + strandat 116.433 kb on + strand, within EX28DRAFT_0167

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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112,809 + EX28DRAFT_0165 0.37 -0.4
112,926 - EX28DRAFT_0165 0.44 -0.3
113,030 - EX28DRAFT_0165 0.51 -0.4
113,259 + EX28DRAFT_0165 0.66 -0.3
113,589 - EX28DRAFT_0165 0.87 +0.4
113,770 + +0.1
113,786 - -0.1
113,823 + -1.7
113,898 + -1.6
113,899 - -2.9
113,899 - -2.3
113,899 - -4.1
114,036 + EX28DRAFT_0166 0.12 +1.0
114,036 + EX28DRAFT_0166 0.12 -1.2
114,037 - EX28DRAFT_0166 0.12 -2.2
114,037 - EX28DRAFT_0166 0.12 -2.1
114,046 + EX28DRAFT_0166 0.12 -3.5
114,067 + EX28DRAFT_0166 0.13 -4.8
114,068 - EX28DRAFT_0166 0.14 -2.2
114,208 - EX28DRAFT_0166 0.20 -1.6
114,208 - EX28DRAFT_0166 0.20 -1.5
114,313 - EX28DRAFT_0166 0.25 -2.1
114,453 + EX28DRAFT_0166 0.32 -0.6
114,454 - EX28DRAFT_0166 0.32 -1.4
114,735 + EX28DRAFT_0166 0.46 -3.1
114,825 + EX28DRAFT_0166 0.50 -2.5
114,825 + EX28DRAFT_0166 0.50 -1.4
114,825 + EX28DRAFT_0166 0.50 -1.2
114,825 + EX28DRAFT_0166 0.50 -0.4
114,826 - EX28DRAFT_0166 0.50 +2.0
114,826 - EX28DRAFT_0166 0.50 -2.6
114,949 + EX28DRAFT_0166 0.56 -1.2
115,015 + EX28DRAFT_0166 0.59 -3.9
115,153 - EX28DRAFT_0166 0.66 -2.2
115,249 + EX28DRAFT_0166 0.71 -2.8
115,389 + EX28DRAFT_0166 0.78 -2.8
115,389 + EX28DRAFT_0166 0.78 +1.6
115,390 - EX28DRAFT_0166 0.78 -3.4
115,444 + EX28DRAFT_0166 0.80 -1.0
115,462 - EX28DRAFT_0166 0.81 -4.0
115,462 - EX28DRAFT_0166 0.81 -0.0
115,567 - EX28DRAFT_0166 0.86 -0.9
115,644 - -3.1
115,701 + -3.7
115,702 - -1.5
115,726 - -2.8
115,787 + -1.6
115,788 - -2.5
115,798 + -2.0
115,814 + -0.0
115,814 + -2.5
115,828 + -1.2
115,830 + -1.2
115,831 - -2.1
115,885 + -1.4
115,886 - -2.6
115,886 - -0.4
115,903 - -1.2
115,925 + -2.4
115,925 + +0.0
115,926 - -1.0
115,926 - +0.6
116,015 + +0.8
116,015 + +0.4
116,015 + +0.4
116,015 + -0.7
116,015 + -0.1
116,016 - +1.1
116,051 - +0.3
116,051 - +0.6
116,058 + -0.2
116,433 + EX28DRAFT_0167 0.59 -1.0

Or see this region's nucleotide sequence