Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0125

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0124 and EX28DRAFT_0125 are separated by 156 nucleotidesEX28DRAFT_0125 and EX28DRAFT_0126 are separated by 169 nucleotides EX28DRAFT_0124: EX28DRAFT_0124 - penicillin-binding protein 1C, at 66,528 to 68,852 _0124 EX28DRAFT_0125: EX28DRAFT_0125 - nucleoside diphosphate kinase (EC 2.7.4.6), at 69,009 to 69,440 _0125 EX28DRAFT_0126: EX28DRAFT_0126 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 69,610 to 70,776 _0126 Position (kb) 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 68.198 kb on - strand, within EX28DRAFT_0124at 68.198 kb on - strand, within EX28DRAFT_0124at 68.949 kb on - strandat 68.950 kb on + strandat 68.975 kb on + strandat 69.327 kb on + strand, within EX28DRAFT_0125at 69.439 kb on - strandat 69.457 kb on - strandat 69.464 kb on - strandat 69.472 kb on - strandat 69.513 kb on + strandat 69.514 kb on - strandat 69.587 kb on + strandat 69.609 kb on + strandat 69.610 kb on - strandat 69.620 kb on + strandat 69.620 kb on + strandat 69.628 kb on - strandat 69.718 kb on - strandat 69.770 kb on - strand, within EX28DRAFT_0126at 69.775 kb on + strand, within EX28DRAFT_0126at 69.943 kb on + strand, within EX28DRAFT_0126at 69.943 kb on + strand, within EX28DRAFT_0126at 69.944 kb on - strand, within EX28DRAFT_0126at 70.113 kb on - strand, within EX28DRAFT_0126at 70.254 kb on + strand, within EX28DRAFT_0126at 70.255 kb on - strand, within EX28DRAFT_0126at 70.255 kb on - strand, within EX28DRAFT_0126

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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68,198 - EX28DRAFT_0124 0.72 -0.1
68,198 - EX28DRAFT_0124 0.72 +1.4
68,949 - +1.3
68,950 + -0.0
68,975 + +0.6
69,327 + EX28DRAFT_0125 0.74 -2.0
69,439 - -0.6
69,457 - -0.6
69,464 - +0.5
69,472 - +0.8
69,513 + -0.1
69,514 - -0.0
69,587 + +0.4
69,609 + +0.7
69,610 - +0.3
69,620 + +0.3
69,620 + +0.2
69,628 - +1.0
69,718 - +2.6
69,770 - EX28DRAFT_0126 0.14 -0.8
69,775 + EX28DRAFT_0126 0.14 -0.9
69,943 + EX28DRAFT_0126 0.29 +1.0
69,943 + EX28DRAFT_0126 0.29 +0.7
69,944 - EX28DRAFT_0126 0.29 -0.6
70,113 - EX28DRAFT_0126 0.43 -0.1
70,254 + EX28DRAFT_0126 0.55 +0.0
70,255 - EX28DRAFT_0126 0.55 -0.2
70,255 - EX28DRAFT_0126 0.55 -0.2

Or see this region's nucleotide sequence