Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0090 and EX28DRAFT_0091 are separated by 135 nucleotides EX28DRAFT_0091 and EX28DRAFT_0092 are separated by 30 nucleotides EX28DRAFT_0092 and EX28DRAFT_0093 are separated by 291 nucleotides EX28DRAFT_0093 and EX28DRAFT_0094 are separated by 96 nucleotides
EX28DRAFT_0090: EX28DRAFT_0090 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 28,574 to 30,124
_0090
EX28DRAFT_0091: EX28DRAFT_0091 - hypothetical protein, at 30,260 to 30,361
_0091
EX28DRAFT_0092: EX28DRAFT_0092 - phosphoribosylformylglycinamidine synthase, single chain form, at 30,392 to 34,279
_0092
EX28DRAFT_0093: EX28DRAFT_0093 - RNA, at 34,571 to 34,717
_0093
EX28DRAFT_0094: EX28DRAFT_0094 - Signal transduction histidine kinase, at 34,814 to 36,241
_0094
Position (kb) 30
31
32
33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.529 kb on + strand, within EX28DRAFT_0090 at 29.530 kb on - strand, within EX28DRAFT_0090 at 29.683 kb on + strand, within EX28DRAFT_0090 at 29.749 kb on - strand, within EX28DRAFT_0090 at 29.751 kb on + strand, within EX28DRAFT_0090 at 29.752 kb on - strand, within EX28DRAFT_0090 at 29.769 kb on + strand, within EX28DRAFT_0090 at 29.791 kb on + strand, within EX28DRAFT_0090 at 29.793 kb on + strand, within EX28DRAFT_0090 at 29.793 kb on + strand, within EX28DRAFT_0090 at 29.794 kb on - strand, within EX28DRAFT_0090 at 29.794 kb on - strand, within EX28DRAFT_0090 at 29.858 kb on - strand, within EX28DRAFT_0090 at 30.084 kb on - strand at 30.174 kb on + strand at 30.239 kb on + strand at 30.258 kb on + strand at 30.259 kb on - strand at 30.325 kb on + strand, within EX28DRAFT_0091 at 30.500 kb on + strand at 31.011 kb on - strand, within EX28DRAFT_0092 at 31.157 kb on + strand, within EX28DRAFT_0092 at 32.043 kb on - strand, within EX28DRAFT_0092 at 32.591 kb on - strand, within EX28DRAFT_0092 at 34.409 kb on + strand at 34.444 kb on + strand at 34.445 kb on - strand at 34.458 kb on - strand at 34.590 kb on + strand, within EX28DRAFT_0093 at 34.591 kb on - strand, within EX28DRAFT_0093 at 34.591 kb on - strand, within EX28DRAFT_0093 at 34.615 kb on - strand, within EX28DRAFT_0093 at 34.618 kb on + strand, within EX28DRAFT_0093 at 34.619 kb on - strand, within EX28DRAFT_0093 at 34.659 kb on + strand, within EX28DRAFT_0093 at 34.659 kb on + strand, within EX28DRAFT_0093 at 34.660 kb on - strand, within EX28DRAFT_0093 at 34.660 kb on - strand, within EX28DRAFT_0093 at 34.679 kb on + strand, within EX28DRAFT_0093 at 34.705 kb on + strand at 34.756 kb on + strand at 34.808 kb on - strand at 35.023 kb on + strand, within EX28DRAFT_0094 at 35.023 kb on + strand, within EX28DRAFT_0094 at 35.023 kb on + strand, within EX28DRAFT_0094 at 35.023 kb on + strand, within EX28DRAFT_0094 at 35.027 kb on + strand, within EX28DRAFT_0094 at 35.027 kb on + strand, within EX28DRAFT_0094 at 35.028 kb on - strand, within EX28DRAFT_0094 at 35.028 kb on - strand, within EX28DRAFT_0094 at 35.054 kb on - strand, within EX28DRAFT_0094 at 35.072 kb on + strand, within EX28DRAFT_0094 at 35.073 kb on - strand, within EX28DRAFT_0094 at 35.086 kb on + strand, within EX28DRAFT_0094
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 29,529 + EX28DRAFT_0090 0.62 -1.0 29,530 - EX28DRAFT_0090 0.62 -0.2 29,683 + EX28DRAFT_0090 0.72 -0.4 29,749 - EX28DRAFT_0090 0.76 -0.0 29,751 + EX28DRAFT_0090 0.76 -0.0 29,752 - EX28DRAFT_0090 0.76 -2.3 29,769 + EX28DRAFT_0090 0.77 +0.1 29,791 + EX28DRAFT_0090 0.78 -0.4 29,793 + EX28DRAFT_0090 0.79 -1.6 29,793 + EX28DRAFT_0090 0.79 -0.1 29,794 - EX28DRAFT_0090 0.79 -1.5 29,794 - EX28DRAFT_0090 0.79 +0.9 29,858 - EX28DRAFT_0090 0.83 +0.0 30,084 - -0.2 30,174 + -0.3 30,239 + -0.6 30,258 + -1.2 30,259 - -1.4 30,325 + EX28DRAFT_0091 0.64 -2.5 30,500 + -0.2 31,011 - EX28DRAFT_0092 0.16 +1.0 31,157 + EX28DRAFT_0092 0.20 +2.0 32,043 - EX28DRAFT_0092 0.42 +2.0 32,591 - EX28DRAFT_0092 0.57 -0.9 34,409 + -1.0 34,444 + -0.2 34,445 - -1.4 34,458 - -0.3 34,590 + EX28DRAFT_0093 0.13 +0.1 34,591 - EX28DRAFT_0093 0.14 -0.7 34,591 - EX28DRAFT_0093 0.14 -0.5 34,615 - EX28DRAFT_0093 0.30 -1.2 34,618 + EX28DRAFT_0093 0.32 +0.1 34,619 - EX28DRAFT_0093 0.33 +0.0 34,659 + EX28DRAFT_0093 0.60 +0.4 34,659 + EX28DRAFT_0093 0.60 +0.1 34,660 - EX28DRAFT_0093 0.61 +0.3 34,660 - EX28DRAFT_0093 0.61 +0.7 34,679 + EX28DRAFT_0093 0.73 -0.3 34,705 + -0.3 34,756 + +0.2 34,808 - -0.6 35,023 + EX28DRAFT_0094 0.15 +0.1 35,023 + EX28DRAFT_0094 0.15 +0.5 35,023 + EX28DRAFT_0094 0.15 +0.0 35,023 + EX28DRAFT_0094 0.15 +0.1 35,027 + EX28DRAFT_0094 0.15 -0.0 35,027 + EX28DRAFT_0094 0.15 +0.7 35,028 - EX28DRAFT_0094 0.15 +0.0 35,028 - EX28DRAFT_0094 0.15 -0.5 35,054 - EX28DRAFT_0094 0.17 +0.5 35,072 + EX28DRAFT_0094 0.18 +0.2 35,073 - EX28DRAFT_0094 0.18 -0.0 35,086 + EX28DRAFT_0094 0.19 +0.5
Or see this region's nucleotide sequence