Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0072 and EX28DRAFT_0073 are separated by 31 nucleotides EX28DRAFT_0073 and EX28DRAFT_0074 overlap by 1 nucleotides EX28DRAFT_0074 and EX28DRAFT_0075 overlap by 4 nucleotides EX28DRAFT_0075 and EX28DRAFT_0076 are separated by 185 nucleotides
EX28DRAFT_0072: EX28DRAFT_0072 - RNA polymerase sigma factor RpoE, at 14,572 to 15,147
_0072
EX28DRAFT_0073: EX28DRAFT_0073 - Negative regulator of sigma E activity, at 15,179 to 15,829
_0073
EX28DRAFT_0074: EX28DRAFT_0074 - sigma E regulatory protein, MucB/RseB, at 15,829 to 16,782
_0074
EX28DRAFT_0075: EX28DRAFT_0075 - positive regulator of sigma(E), RseC/MucC, at 16,779 to 17,255
_0075
EX28DRAFT_0076: EX28DRAFT_0076 - elongation factor 4, at 17,441 to 19,240
_0076
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 15.120 kb on + strand at 15.542 kb on - strand, within EX28DRAFT_0073 at 15.544 kb on + strand, within EX28DRAFT_0073 at 15.970 kb on - strand, within EX28DRAFT_0074 at 15.981 kb on + strand, within EX28DRAFT_0074 at 15.982 kb on - strand, within EX28DRAFT_0074 at 16.049 kb on + strand, within EX28DRAFT_0074 at 16.050 kb on - strand, within EX28DRAFT_0074 at 16.145 kb on - strand, within EX28DRAFT_0074 at 16.146 kb on + strand, within EX28DRAFT_0074 at 16.147 kb on - strand, within EX28DRAFT_0074 at 16.174 kb on + strand, within EX28DRAFT_0074 at 16.204 kb on + strand, within EX28DRAFT_0074 at 16.212 kb on + strand, within EX28DRAFT_0074 at 16.288 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.482 kb on + strand, within EX28DRAFT_0074 at 16.585 kb on + strand, within EX28DRAFT_0074 at 16.618 kb on - strand, within EX28DRAFT_0074 at 16.680 kb on + strand, within EX28DRAFT_0074 at 16.681 kb on - strand, within EX28DRAFT_0074 at 16.761 kb on + strand at 16.761 kb on + strand at 16.857 kb on - strand, within EX28DRAFT_0075 at 16.857 kb on - strand, within EX28DRAFT_0075 at 16.860 kb on - strand, within EX28DRAFT_0075 at 16.902 kb on - strand, within EX28DRAFT_0075 at 17.022 kb on + strand, within EX28DRAFT_0075 at 17.048 kb on + strand, within EX28DRAFT_0075 at 17.048 kb on + strand, within EX28DRAFT_0075 at 17.096 kb on + strand, within EX28DRAFT_0075 at 17.315 kb on + strand at 17.316 kb on - strand at 17.325 kb on + strand at 17.326 kb on - strand at 17.326 kb on - strand at 17.326 kb on - strand at 17.326 kb on - strand at 17.352 kb on + strand at 17.352 kb on + strand at 17.352 kb on + strand at 17.357 kb on + strand at 17.430 kb on + strand at 17.509 kb on + strand at 17.627 kb on + strand, within EX28DRAFT_0076
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 15,120 + -0.0 15,542 - EX28DRAFT_0073 0.56 -1.2 15,544 + EX28DRAFT_0073 0.56 +2.0 15,970 - EX28DRAFT_0074 0.15 -1.2 15,981 + EX28DRAFT_0074 0.16 -1.9 15,982 - EX28DRAFT_0074 0.16 -1.0 16,049 + EX28DRAFT_0074 0.23 +0.4 16,050 - EX28DRAFT_0074 0.23 -0.6 16,145 - EX28DRAFT_0074 0.33 -0.3 16,146 + EX28DRAFT_0074 0.33 -0.5 16,147 - EX28DRAFT_0074 0.33 -1.3 16,174 + EX28DRAFT_0074 0.36 -1.5 16,204 + EX28DRAFT_0074 0.39 -2.1 16,212 + EX28DRAFT_0074 0.40 -1.4 16,288 + EX28DRAFT_0074 0.48 -2.0 16,294 + EX28DRAFT_0074 0.49 -0.3 16,294 + EX28DRAFT_0074 0.49 -0.3 16,294 + EX28DRAFT_0074 0.49 -1.1 16,294 + EX28DRAFT_0074 0.49 -0.3 16,294 + EX28DRAFT_0074 0.49 -0.5 16,294 + EX28DRAFT_0074 0.49 +2.0 16,295 - EX28DRAFT_0074 0.49 +1.5 16,295 - EX28DRAFT_0074 0.49 -1.0 16,295 - EX28DRAFT_0074 0.49 -2.0 16,295 - EX28DRAFT_0074 0.49 -0.5 16,295 - EX28DRAFT_0074 0.49 -2.3 16,295 - EX28DRAFT_0074 0.49 +0.7 16,482 + EX28DRAFT_0074 0.68 -0.9 16,585 + EX28DRAFT_0074 0.79 -0.4 16,618 - EX28DRAFT_0074 0.83 +1.0 16,680 + EX28DRAFT_0074 0.89 -0.5 16,681 - EX28DRAFT_0074 0.89 -0.6 16,761 + -0.8 16,761 + -1.3 16,857 - EX28DRAFT_0075 0.16 -0.5 16,857 - EX28DRAFT_0075 0.16 -1.7 16,860 - EX28DRAFT_0075 0.17 -0.6 16,902 - EX28DRAFT_0075 0.26 -0.5 17,022 + EX28DRAFT_0075 0.51 -0.8 17,048 + EX28DRAFT_0075 0.56 -0.4 17,048 + EX28DRAFT_0075 0.56 -0.9 17,096 + EX28DRAFT_0075 0.66 +0.2 17,315 + +0.8 17,316 - -1.2 17,325 + -0.4 17,326 - -1.4 17,326 - +0.6 17,326 - -0.5 17,326 - +0.1 17,352 + -0.1 17,352 + -0.0 17,352 + +0.3 17,357 + +0.6 17,430 + +0.0 17,509 + +0.6 17,627 + EX28DRAFT_0076 0.10 -1.0
Or see this region's nucleotide sequence