Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0074

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0072 and EX28DRAFT_0073 are separated by 31 nucleotidesEX28DRAFT_0073 and EX28DRAFT_0074 overlap by 1 nucleotidesEX28DRAFT_0074 and EX28DRAFT_0075 overlap by 4 nucleotidesEX28DRAFT_0075 and EX28DRAFT_0076 are separated by 185 nucleotides EX28DRAFT_0072: EX28DRAFT_0072 - RNA polymerase sigma factor RpoE, at 14,572 to 15,147 _0072 EX28DRAFT_0073: EX28DRAFT_0073 - Negative regulator of sigma E activity, at 15,179 to 15,829 _0073 EX28DRAFT_0074: EX28DRAFT_0074 - sigma E regulatory protein, MucB/RseB, at 15,829 to 16,782 _0074 EX28DRAFT_0075: EX28DRAFT_0075 - positive regulator of sigma(E), RseC/MucC, at 16,779 to 17,255 _0075 EX28DRAFT_0076: EX28DRAFT_0076 - elongation factor 4, at 17,441 to 19,240 _0076 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1 2at 15.120 kb on + strandat 15.542 kb on - strand, within EX28DRAFT_0073at 15.544 kb on + strand, within EX28DRAFT_0073at 15.970 kb on - strand, within EX28DRAFT_0074at 15.981 kb on + strand, within EX28DRAFT_0074at 15.982 kb on - strand, within EX28DRAFT_0074at 16.049 kb on + strand, within EX28DRAFT_0074at 16.050 kb on - strand, within EX28DRAFT_0074at 16.145 kb on - strand, within EX28DRAFT_0074at 16.146 kb on + strand, within EX28DRAFT_0074at 16.147 kb on - strand, within EX28DRAFT_0074at 16.174 kb on + strand, within EX28DRAFT_0074at 16.204 kb on + strand, within EX28DRAFT_0074at 16.212 kb on + strand, within EX28DRAFT_0074at 16.288 kb on + strand, within EX28DRAFT_0074at 16.294 kb on + strand, within EX28DRAFT_0074at 16.294 kb on + strand, within EX28DRAFT_0074at 16.294 kb on + strand, within EX28DRAFT_0074at 16.294 kb on + strand, within EX28DRAFT_0074at 16.294 kb on + strand, within EX28DRAFT_0074at 16.294 kb on + strand, within EX28DRAFT_0074at 16.295 kb on - strand, within EX28DRAFT_0074at 16.295 kb on - strand, within EX28DRAFT_0074at 16.295 kb on - strand, within EX28DRAFT_0074at 16.295 kb on - strand, within EX28DRAFT_0074at 16.295 kb on - strand, within EX28DRAFT_0074at 16.295 kb on - strand, within EX28DRAFT_0074at 16.482 kb on + strand, within EX28DRAFT_0074at 16.585 kb on + strand, within EX28DRAFT_0074at 16.618 kb on - strand, within EX28DRAFT_0074at 16.680 kb on + strand, within EX28DRAFT_0074at 16.681 kb on - strand, within EX28DRAFT_0074at 16.761 kb on + strandat 16.761 kb on + strandat 16.857 kb on - strand, within EX28DRAFT_0075at 16.857 kb on - strand, within EX28DRAFT_0075at 16.860 kb on - strand, within EX28DRAFT_0075at 16.902 kb on - strand, within EX28DRAFT_0075at 17.022 kb on + strand, within EX28DRAFT_0075at 17.048 kb on + strand, within EX28DRAFT_0075at 17.048 kb on + strand, within EX28DRAFT_0075at 17.096 kb on + strand, within EX28DRAFT_0075at 17.315 kb on + strandat 17.316 kb on - strandat 17.325 kb on + strandat 17.326 kb on - strandat 17.326 kb on - strandat 17.326 kb on - strandat 17.326 kb on - strandat 17.352 kb on + strandat 17.352 kb on + strandat 17.352 kb on + strandat 17.357 kb on + strandat 17.430 kb on + strandat 17.509 kb on + strandat 17.627 kb on + strand, within EX28DRAFT_0076

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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15,120 + -0.0
15,542 - EX28DRAFT_0073 0.56 -1.2
15,544 + EX28DRAFT_0073 0.56 +2.0
15,970 - EX28DRAFT_0074 0.15 -1.2
15,981 + EX28DRAFT_0074 0.16 -1.9
15,982 - EX28DRAFT_0074 0.16 -1.0
16,049 + EX28DRAFT_0074 0.23 +0.4
16,050 - EX28DRAFT_0074 0.23 -0.6
16,145 - EX28DRAFT_0074 0.33 -0.3
16,146 + EX28DRAFT_0074 0.33 -0.5
16,147 - EX28DRAFT_0074 0.33 -1.3
16,174 + EX28DRAFT_0074 0.36 -1.5
16,204 + EX28DRAFT_0074 0.39 -2.1
16,212 + EX28DRAFT_0074 0.40 -1.4
16,288 + EX28DRAFT_0074 0.48 -2.0
16,294 + EX28DRAFT_0074 0.49 -0.3
16,294 + EX28DRAFT_0074 0.49 -0.3
16,294 + EX28DRAFT_0074 0.49 -1.1
16,294 + EX28DRAFT_0074 0.49 -0.3
16,294 + EX28DRAFT_0074 0.49 -0.5
16,294 + EX28DRAFT_0074 0.49 +2.0
16,295 - EX28DRAFT_0074 0.49 +1.5
16,295 - EX28DRAFT_0074 0.49 -1.0
16,295 - EX28DRAFT_0074 0.49 -2.0
16,295 - EX28DRAFT_0074 0.49 -0.5
16,295 - EX28DRAFT_0074 0.49 -2.3
16,295 - EX28DRAFT_0074 0.49 +0.7
16,482 + EX28DRAFT_0074 0.68 -0.9
16,585 + EX28DRAFT_0074 0.79 -0.4
16,618 - EX28DRAFT_0074 0.83 +1.0
16,680 + EX28DRAFT_0074 0.89 -0.5
16,681 - EX28DRAFT_0074 0.89 -0.6
16,761 + -0.8
16,761 + -1.3
16,857 - EX28DRAFT_0075 0.16 -0.5
16,857 - EX28DRAFT_0075 0.16 -1.7
16,860 - EX28DRAFT_0075 0.17 -0.6
16,902 - EX28DRAFT_0075 0.26 -0.5
17,022 + EX28DRAFT_0075 0.51 -0.8
17,048 + EX28DRAFT_0075 0.56 -0.4
17,048 + EX28DRAFT_0075 0.56 -0.9
17,096 + EX28DRAFT_0075 0.66 +0.2
17,315 + +0.8
17,316 - -1.2
17,325 + -0.4
17,326 - -1.4
17,326 - +0.6
17,326 - -0.5
17,326 - +0.1
17,352 + -0.1
17,352 + -0.0
17,352 + +0.3
17,357 + +0.6
17,430 + +0.0
17,509 + +0.6
17,627 + EX28DRAFT_0076 0.10 -1.0

Or see this region's nucleotide sequence