Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0061

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0060 and EX28DRAFT_0061 overlap by 4 nucleotidesEX28DRAFT_0061 and EX28DRAFT_0062 are separated by 45 nucleotides EX28DRAFT_0060: EX28DRAFT_0060 - metabolite-proton symporter, at 521 to 1,816 _0060 EX28DRAFT_0061: EX28DRAFT_0061 - Predicted periplasmic lipoprotein, at 1,813 to 2,136 _0061 EX28DRAFT_0062: EX28DRAFT_0062 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 2,182 to 3,537 _0062 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.878 kb on - strand, within EX28DRAFT_0060at 0.895 kb on - strand, within EX28DRAFT_0060at 0.897 kb on + strand, within EX28DRAFT_0060at 0.897 kb on + strand, within EX28DRAFT_0060at 0.897 kb on + strand, within EX28DRAFT_0060at 0.901 kb on - strand, within EX28DRAFT_0060at 0.913 kb on - strand, within EX28DRAFT_0060at 0.959 kb on + strand, within EX28DRAFT_0060at 0.959 kb on + strand, within EX28DRAFT_0060at 0.988 kb on + strand, within EX28DRAFT_0060at 1.014 kb on - strand, within EX28DRAFT_0060at 1.014 kb on - strand, within EX28DRAFT_0060at 1.256 kb on - strand, within EX28DRAFT_0060at 1.310 kb on + strand, within EX28DRAFT_0060at 1.310 kb on + strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.311 kb on - strand, within EX28DRAFT_0060at 1.312 kb on + strand, within EX28DRAFT_0060at 1.393 kb on + strand, within EX28DRAFT_0060at 1.401 kb on + strand, within EX28DRAFT_0060at 1.401 kb on + strand, within EX28DRAFT_0060at 1.408 kb on + strand, within EX28DRAFT_0060at 1.408 kb on + strand, within EX28DRAFT_0060at 1.408 kb on + strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.409 kb on - strand, within EX28DRAFT_0060at 1.445 kb on - strand, within EX28DRAFT_0060at 1.480 kb on - strand, within EX28DRAFT_0060at 1.483 kb on + strand, within EX28DRAFT_0060at 1.483 kb on + strand, within EX28DRAFT_0060at 1.483 kb on + strand, within EX28DRAFT_0060at 1.492 kb on + strand, within EX28DRAFT_0060at 1.493 kb on - strand, within EX28DRAFT_0060at 1.493 kb on - strand, within EX28DRAFT_0060at 1.574 kb on + strand, within EX28DRAFT_0060at 1.574 kb on + strand, within EX28DRAFT_0060at 1.575 kb on - strand, within EX28DRAFT_0060at 1.582 kb on + strand, within EX28DRAFT_0060at 1.583 kb on - strand, within EX28DRAFT_0060at 1.583 kb on - strand, within EX28DRAFT_0060at 1.583 kb on - strand, within EX28DRAFT_0060at 1.623 kb on + strand, within EX28DRAFT_0060at 1.623 kb on + strand, within EX28DRAFT_0060at 1.624 kb on - strand, within EX28DRAFT_0060at 1.650 kb on - strand, within EX28DRAFT_0060at 1.660 kb on + strand, within EX28DRAFT_0060at 1.661 kb on - strand, within EX28DRAFT_0060at 1.661 kb on - strand, within EX28DRAFT_0060at 1.661 kb on - strand, within EX28DRAFT_0060at 1.972 kb on - strand, within EX28DRAFT_0061at 1.985 kb on + strand, within EX28DRAFT_0061at 2.074 kb on - strand, within EX28DRAFT_0061at 2.119 kb on + strandat 2.130 kb on + strandat 2.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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878 - EX28DRAFT_0060 0.28 +0.2
895 - EX28DRAFT_0060 0.29 -0.9
897 + EX28DRAFT_0060 0.29 +0.6
897 + EX28DRAFT_0060 0.29 +0.5
897 + EX28DRAFT_0060 0.29 +0.3
901 - EX28DRAFT_0060 0.29 +0.4
913 - EX28DRAFT_0060 0.30 -1.1
959 + EX28DRAFT_0060 0.34 +0.3
959 + EX28DRAFT_0060 0.34 -0.0
988 + EX28DRAFT_0060 0.36 -0.1
1,014 - EX28DRAFT_0060 0.38 +0.5
1,014 - EX28DRAFT_0060 0.38 +0.1
1,256 - EX28DRAFT_0060 0.57 +0.1
1,310 + EX28DRAFT_0060 0.61 -1.1
1,310 + EX28DRAFT_0060 0.61 -0.0
1,311 - EX28DRAFT_0060 0.61 -0.0
1,311 - EX28DRAFT_0060 0.61 -0.4
1,311 - EX28DRAFT_0060 0.61 +0.7
1,311 - EX28DRAFT_0060 0.61 -0.2
1,311 - EX28DRAFT_0060 0.61 -1.2
1,312 + EX28DRAFT_0060 0.61 -0.2
1,393 + EX28DRAFT_0060 0.67 +0.6
1,401 + EX28DRAFT_0060 0.68 -0.4
1,401 + EX28DRAFT_0060 0.68 -0.2
1,408 + EX28DRAFT_0060 0.68 -0.6
1,408 + EX28DRAFT_0060 0.68 -0.0
1,408 + EX28DRAFT_0060 0.68 +0.3
1,409 - EX28DRAFT_0060 0.69 +0.2
1,409 - EX28DRAFT_0060 0.69 +0.5
1,409 - EX28DRAFT_0060 0.69 +0.8
1,409 - EX28DRAFT_0060 0.69 -0.0
1,445 - EX28DRAFT_0060 0.71 +0.3
1,480 - EX28DRAFT_0060 0.74 +0.5
1,483 + EX28DRAFT_0060 0.74 +0.5
1,483 + EX28DRAFT_0060 0.74 -0.9
1,483 + EX28DRAFT_0060 0.74 -0.3
1,492 + EX28DRAFT_0060 0.75 -0.0
1,493 - EX28DRAFT_0060 0.75 +0.1
1,493 - EX28DRAFT_0060 0.75 +2.7
1,574 + EX28DRAFT_0060 0.81 -1.2
1,574 + EX28DRAFT_0060 0.81 +0.3
1,575 - EX28DRAFT_0060 0.81 -0.3
1,582 + EX28DRAFT_0060 0.82 -0.4
1,583 - EX28DRAFT_0060 0.82 -0.9
1,583 - EX28DRAFT_0060 0.82 +0.2
1,583 - EX28DRAFT_0060 0.82 -0.8
1,623 + EX28DRAFT_0060 0.85 +1.1
1,623 + EX28DRAFT_0060 0.85 +0.6
1,624 - EX28DRAFT_0060 0.85 -1.7
1,650 - EX28DRAFT_0060 0.87 +0.2
1,660 + EX28DRAFT_0060 0.88 +0.1
1,661 - EX28DRAFT_0060 0.88 -0.9
1,661 - EX28DRAFT_0060 0.88 -2.8
1,661 - EX28DRAFT_0060 0.88 +0.3
1,972 - EX28DRAFT_0061 0.49 +1.0
1,985 + EX28DRAFT_0061 0.53 +0.7
2,074 - EX28DRAFT_0061 0.81 -0.0
2,119 + -0.8
2,130 + -0.6
2,131 - +0.1

Or see this region's nucleotide sequence