Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0046

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0044 and EX28DRAFT_0045 overlap by 8 nucleotidesEX28DRAFT_0045 and EX28DRAFT_0046 are separated by 4 nucleotidesEX28DRAFT_0046 and EX28DRAFT_0047 overlap by 4 nucleotidesEX28DRAFT_0047 and EX28DRAFT_0048 overlap by 25 nucleotides EX28DRAFT_0044: EX28DRAFT_0044 - Zn-finger domain associated with topoisomerase type I, at 23,597 to 24,151 _0044 EX28DRAFT_0045: EX28DRAFT_0045 - Putative translation factor (SUA5), at 24,144 to 24,716 _0045 EX28DRAFT_0046: EX28DRAFT_0046 - shikimate dehydrogenase, at 24,721 to 25,539 _0046 EX28DRAFT_0047: EX28DRAFT_0047 - Protein of unknown function (DUF1488), at 25,536 to 25,784 _0047 EX28DRAFT_0048: EX28DRAFT_0048 - Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily, at 25,760 to 26,314 _0048 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 23.723 kb on + strand, within EX28DRAFT_0044at 23.723 kb on + strand, within EX28DRAFT_0044at 23.724 kb on - strand, within EX28DRAFT_0044at 23.724 kb on - strand, within EX28DRAFT_0044at 23.758 kb on + strand, within EX28DRAFT_0044at 23.759 kb on - strand, within EX28DRAFT_0044at 23.808 kb on + strand, within EX28DRAFT_0044at 23.872 kb on + strand, within EX28DRAFT_0044at 23.872 kb on + strand, within EX28DRAFT_0044at 23.873 kb on - strand, within EX28DRAFT_0044at 23.873 kb on - strand, within EX28DRAFT_0044at 23.940 kb on + strand, within EX28DRAFT_0044at 23.963 kb on - strand, within EX28DRAFT_0044at 23.963 kb on - strand, within EX28DRAFT_0044at 24.058 kb on - strand, within EX28DRAFT_0044at 24.063 kb on + strand, within EX28DRAFT_0044at 24.107 kb on - strandat 24.731 kb on - strandat 24.817 kb on + strand, within EX28DRAFT_0046at 24.818 kb on - strand, within EX28DRAFT_0046at 24.850 kb on - strand, within EX28DRAFT_0046at 25.122 kb on - strand, within EX28DRAFT_0046at 25.341 kb on + strand, within EX28DRAFT_0046at 25.345 kb on + strand, within EX28DRAFT_0046at 25.346 kb on - strand, within EX28DRAFT_0046at 25.628 kb on + strand, within EX28DRAFT_0047at 25.628 kb on + strand, within EX28DRAFT_0047at 25.629 kb on - strand, within EX28DRAFT_0047at 25.690 kb on + strand, within EX28DRAFT_0047at 25.791 kb on + strandat 25.807 kb on + strandat 25.812 kb on + strandat 25.812 kb on + strandat 25.812 kb on + strandat 25.813 kb on - strandat 25.897 kb on - strand, within EX28DRAFT_0048at 25.897 kb on - strand, within EX28DRAFT_0048at 25.925 kb on + strand, within EX28DRAFT_0048at 25.950 kb on - strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.962 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 26.094 kb on + strand, within EX28DRAFT_0048at 26.094 kb on + strand, within EX28DRAFT_0048at 26.137 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.164 kb on - strand, within EX28DRAFT_0048at 26.164 kb on - strand, within EX28DRAFT_0048at 26.167 kb on + strand, within EX28DRAFT_0048at 26.168 kb on - strand, within EX28DRAFT_0048at 26.290 kb on + strandat 26.290 kb on + strandat 26.292 kb on + strandat 26.292 kb on + strandat 26.292 kb on + strandat 26.300 kb on + strandat 26.300 kb on + strandat 26.300 kb on + strandat 26.301 kb on - strandat 26.301 kb on - strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.315 kb on - strandat 26.315 kb on - strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.319 kb on - strandat 26.319 kb on - strandat 26.357 kb on + strandat 26.361 kb on - strandat 26.391 kb on + strandat 26.396 kb on - strandat 26.489 kb on + strandat 26.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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23,723 + EX28DRAFT_0044 0.23 +0.1
23,723 + EX28DRAFT_0044 0.23 +0.1
23,724 - EX28DRAFT_0044 0.23 -0.1
23,724 - EX28DRAFT_0044 0.23 -0.4
23,758 + EX28DRAFT_0044 0.29 -0.2
23,759 - EX28DRAFT_0044 0.29 +2.3
23,808 + EX28DRAFT_0044 0.38 +0.2
23,872 + EX28DRAFT_0044 0.50 +0.5
23,872 + EX28DRAFT_0044 0.50 +0.4
23,873 - EX28DRAFT_0044 0.50 -0.6
23,873 - EX28DRAFT_0044 0.50 -1.5
23,940 + EX28DRAFT_0044 0.62 -0.2
23,963 - EX28DRAFT_0044 0.66 +0.2
23,963 - EX28DRAFT_0044 0.66 +0.1
24,058 - EX28DRAFT_0044 0.83 -0.0
24,063 + EX28DRAFT_0044 0.84 -0.2
24,107 - +2.5
24,731 - -1.1
24,817 + EX28DRAFT_0046 0.12 -1.8
24,818 - EX28DRAFT_0046 0.12 +0.6
24,850 - EX28DRAFT_0046 0.16 -1.8
25,122 - EX28DRAFT_0046 0.49 -0.4
25,341 + EX28DRAFT_0046 0.76 +0.9
25,345 + EX28DRAFT_0046 0.76 -1.2
25,346 - EX28DRAFT_0046 0.76 +1.9
25,628 + EX28DRAFT_0047 0.37 -0.9
25,628 + EX28DRAFT_0047 0.37 +0.3
25,629 - EX28DRAFT_0047 0.37 -0.4
25,690 + EX28DRAFT_0047 0.62 -0.1
25,791 + +0.6
25,807 + -0.1
25,812 + -0.3
25,812 + +0.2
25,812 + -1.8
25,813 - -0.4
25,897 - EX28DRAFT_0048 0.25 +0.2
25,897 - EX28DRAFT_0048 0.25 +0.1
25,925 + EX28DRAFT_0048 0.30 +0.6
25,950 - EX28DRAFT_0048 0.34 +0.1
25,961 + EX28DRAFT_0048 0.36 -0.6
25,961 + EX28DRAFT_0048 0.36 -0.4
25,961 + EX28DRAFT_0048 0.36 -0.5
25,962 - EX28DRAFT_0048 0.36 +0.1
25,965 - EX28DRAFT_0048 0.37 -0.9
25,965 - EX28DRAFT_0048 0.37 +0.5
25,965 - EX28DRAFT_0048 0.37 +0.6
25,965 - EX28DRAFT_0048 0.37 +1.0
25,965 - EX28DRAFT_0048 0.37 +0.2
26,094 + EX28DRAFT_0048 0.60 +0.1
26,094 + EX28DRAFT_0048 0.60 -0.7
26,137 + EX28DRAFT_0048 0.68 -0.9
26,163 + EX28DRAFT_0048 0.73 +0.3
26,163 + EX28DRAFT_0048 0.73 +0.4
26,163 + EX28DRAFT_0048 0.73 -2.1
26,164 - EX28DRAFT_0048 0.73 +0.0
26,164 - EX28DRAFT_0048 0.73 +0.0
26,167 + EX28DRAFT_0048 0.73 +0.2
26,168 - EX28DRAFT_0048 0.74 +0.4
26,290 + -0.0
26,290 + -0.8
26,292 + +0.1
26,292 + -1.4
26,292 + -0.1
26,300 + -0.5
26,300 + -0.1
26,300 + -0.0
26,301 - +0.1
26,301 - -1.1
26,314 + -0.0
26,314 + +0.2
26,314 + -0.1
26,314 + +0.1
26,315 - -0.5
26,315 - +0.1
26,318 + -0.9
26,318 + +0.0
26,318 + +0.0
26,318 + +0.4
26,319 - +0.4
26,319 - -0.3
26,357 + -0.4
26,361 - +0.5
26,391 + +0.1
26,396 - +0.2
26,489 + -0.5
26,489 + +0.1

Or see this region's nucleotide sequence