Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17710

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17700 and CA264_17705 are separated by 141 nucleotidesCA264_17705 and CA264_17710 are separated by 70 nucleotidesCA264_17710 and CA264_17715 are separated by 242 nucleotidesCA264_17715 and CA264_17720 are separated by 66 nucleotides CA264_17700: CA264_17700 - hypothetical protein, at 4,119,564 to 4,120,304 _17700 CA264_17705: CA264_17705 - hypothetical protein, at 4,120,446 to 4,121,006 _17705 CA264_17710: CA264_17710 - hypothetical protein, at 4,121,077 to 4,121,814 _17710 CA264_17715: CA264_17715 - hypothetical protein, at 4,122,057 to 4,122,557 _17715 CA264_17720: CA264_17720 - beta-ketoadipyl CoA thiolase, at 4,122,624 to 4,123,823 _17720 Position (kb) 4121 4122Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4120.101 kb on - strand, within CA264_17700at 4120.105 kb on - strand, within CA264_17700at 4120.134 kb on - strand, within CA264_17700at 4120.134 kb on - strand, within CA264_17700at 4120.156 kb on + strand, within CA264_17700at 4120.157 kb on - strand, within CA264_17700at 4120.162 kb on - strand, within CA264_17700at 4120.209 kb on + strand, within CA264_17700at 4120.236 kb on + strandat 4120.241 kb on + strandat 4120.241 kb on + strandat 4120.242 kb on - strandat 4120.242 kb on - strandat 4120.242 kb on - strandat 4120.250 kb on + strandat 4120.276 kb on - strandat 4120.302 kb on + strandat 4120.381 kb on - strandat 4120.381 kb on - strandat 4120.433 kb on + strandat 4120.433 kb on + strandat 4120.434 kb on - strandat 4120.452 kb on + strandat 4120.452 kb on + strandat 4120.464 kb on + strandat 4120.465 kb on - strandat 4120.466 kb on + strandat 4120.478 kb on + strandat 4120.490 kb on + strandat 4120.490 kb on + strandat 4120.495 kb on - strandat 4120.495 kb on - strandat 4120.500 kb on + strandat 4120.500 kb on + strandat 4120.600 kb on + strand, within CA264_17705at 4120.640 kb on + strand, within CA264_17705at 4120.640 kb on + strand, within CA264_17705at 4120.643 kb on + strand, within CA264_17705at 4120.673 kb on - strand, within CA264_17705at 4120.678 kb on - strand, within CA264_17705at 4120.689 kb on + strand, within CA264_17705at 4120.730 kb on + strand, within CA264_17705at 4120.731 kb on - strand, within CA264_17705at 4120.784 kb on + strand, within CA264_17705at 4120.784 kb on + strand, within CA264_17705at 4120.785 kb on - strand, within CA264_17705at 4120.785 kb on - strand, within CA264_17705at 4120.785 kb on - strand, within CA264_17705at 4120.787 kb on + strand, within CA264_17705at 4120.788 kb on - strand, within CA264_17705at 4120.827 kb on + strand, within CA264_17705at 4120.827 kb on + strand, within CA264_17705at 4120.831 kb on + strand, within CA264_17705at 4120.831 kb on + strand, within CA264_17705at 4120.831 kb on + strand, within CA264_17705at 4120.894 kb on - strand, within CA264_17705at 4120.913 kb on + strand, within CA264_17705at 4120.941 kb on + strand, within CA264_17705at 4120.941 kb on + strand, within CA264_17705at 4120.967 kb on - strandat 4120.978 kb on - strandat 4120.978 kb on - strandat 4120.985 kb on + strandat 4121.004 kb on + strandat 4121.017 kb on - strandat 4121.036 kb on - strandat 4121.055 kb on + strandat 4121.068 kb on - strandat 4121.090 kb on + strandat 4121.090 kb on + strandat 4121.091 kb on - strandat 4121.091 kb on - strandat 4121.093 kb on + strandat 4121.144 kb on + strandat 4121.145 kb on - strandat 4121.149 kb on - strandat 4121.149 kb on - strandat 4121.184 kb on - strand, within CA264_17710at 4121.189 kb on + strand, within CA264_17710at 4121.190 kb on - strand, within CA264_17710at 4121.220 kb on + strand, within CA264_17710at 4121.221 kb on - strand, within CA264_17710at 4121.224 kb on + strand, within CA264_17710at 4121.224 kb on + strand, within CA264_17710at 4121.225 kb on - strand, within CA264_17710at 4121.235 kb on - strand, within CA264_17710at 4121.239 kb on - strand, within CA264_17710at 4121.260 kb on + strand, within CA264_17710at 4121.297 kb on - strand, within CA264_17710at 4121.297 kb on - strand, within CA264_17710at 4121.298 kb on + strand, within CA264_17710at 4121.299 kb on - strand, within CA264_17710at 4121.316 kb on - strand, within CA264_17710at 4121.381 kb on - strand, within CA264_17710at 4121.458 kb on + strand, within CA264_17710at 4121.459 kb on - strand, within CA264_17710at 4121.459 kb on - strand, within CA264_17710at 4121.476 kb on + strand, within CA264_17710at 4121.476 kb on + strand, within CA264_17710at 4121.704 kb on + strand, within CA264_17710at 4121.704 kb on + strand, within CA264_17710at 4121.705 kb on - strand, within CA264_17710at 4121.710 kb on + strand, within CA264_17710at 4121.711 kb on - strand, within CA264_17710at 4121.716 kb on + strand, within CA264_17710at 4121.716 kb on + strand, within CA264_17710at 4121.717 kb on - strand, within CA264_17710at 4121.744 kb on - strandat 4121.744 kb on - strandat 4121.750 kb on - strandat 4121.883 kb on + strandat 4121.888 kb on + strandat 4121.981 kb on - strandat 4122.021 kb on + strandat 4122.552 kb on + strandat 4122.557 kb on + strandat 4122.557 kb on + strandat 4122.557 kb on + strandat 4122.558 kb on - strandat 4122.558 kb on - strandat 4122.572 kb on - strandat 4122.582 kb on - strandat 4122.595 kb on - strandat 4122.629 kb on + strandat 4122.629 kb on + strandat 4122.629 kb on + strandat 4122.636 kb on + strandat 4122.636 kb on + strandat 4122.636 kb on + strandat 4122.637 kb on - strandat 4122.639 kb on - strandat 4122.639 kb on - strandat 4122.640 kb on + strandat 4122.640 kb on + strandat 4122.641 kb on - strandat 4122.641 kb on - strandat 4122.648 kb on - strandat 4122.649 kb on + strandat 4122.649 kb on + strandat 4122.650 kb on - strandat 4122.653 kb on + strandat 4122.653 kb on + strandat 4122.653 kb on + strandat 4122.654 kb on - strandat 4122.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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4,120,101 - CA264_17700 0.72 -1.2
4,120,105 - CA264_17700 0.73 -0.7
4,120,134 - CA264_17700 0.77 -1.1
4,120,134 - CA264_17700 0.77 -1.0
4,120,156 + CA264_17700 0.80 -0.7
4,120,157 - CA264_17700 0.80 +1.4
4,120,162 - CA264_17700 0.81 +0.5
4,120,209 + CA264_17700 0.87 -0.3
4,120,236 + -0.8
4,120,241 + -1.0
4,120,241 + -0.0
4,120,242 - -0.6
4,120,242 - -0.9
4,120,242 - +0.6
4,120,250 + -0.4
4,120,276 - -1.1
4,120,302 + -1.3
4,120,381 - +0.3
4,120,381 - +0.4
4,120,433 + -0.2
4,120,433 + +0.8
4,120,434 - -0.1
4,120,452 + -0.4
4,120,452 + -0.2
4,120,464 + -1.1
4,120,465 - +2.0
4,120,466 + +0.2
4,120,478 + -0.3
4,120,490 + -0.4
4,120,490 + +0.7
4,120,495 - -0.4
4,120,495 - -0.3
4,120,500 + +0.3
4,120,500 + -0.1
4,120,600 + CA264_17705 0.27 -0.1
4,120,640 + CA264_17705 0.35 +0.9
4,120,640 + CA264_17705 0.35 +0.2
4,120,643 + CA264_17705 0.35 -0.8
4,120,673 - CA264_17705 0.40 +0.3
4,120,678 - CA264_17705 0.41 -0.6
4,120,689 + CA264_17705 0.43 -0.1
4,120,730 + CA264_17705 0.51 -0.1
4,120,731 - CA264_17705 0.51 -0.1
4,120,784 + CA264_17705 0.60 +0.2
4,120,784 + CA264_17705 0.60 -1.3
4,120,785 - CA264_17705 0.60 -0.7
4,120,785 - CA264_17705 0.60 -0.0
4,120,785 - CA264_17705 0.60 -1.1
4,120,787 + CA264_17705 0.61 -0.3
4,120,788 - CA264_17705 0.61 -1.3
4,120,827 + CA264_17705 0.68 -0.2
4,120,827 + CA264_17705 0.68 +1.0
4,120,831 + CA264_17705 0.69 -0.4
4,120,831 + CA264_17705 0.69 -0.4
4,120,831 + CA264_17705 0.69 -0.8
4,120,894 - CA264_17705 0.80 -1.0
4,120,913 + CA264_17705 0.83 -0.7
4,120,941 + CA264_17705 0.88 -0.2
4,120,941 + CA264_17705 0.88 -0.6
4,120,967 - -0.0
4,120,978 - +0.5
4,120,978 - -0.6
4,120,985 + -0.4
4,121,004 + -0.7
4,121,017 - -0.4
4,121,036 - -0.2
4,121,055 + +0.4
4,121,068 - +0.2
4,121,090 + -0.5
4,121,090 + -1.1
4,121,091 - +0.1
4,121,091 - +0.1
4,121,093 + -0.2
4,121,144 + -0.1
4,121,145 - -1.2
4,121,149 - +0.1
4,121,149 - -0.3
4,121,184 - CA264_17710 0.14 -0.6
4,121,189 + CA264_17710 0.15 -0.9
4,121,190 - CA264_17710 0.15 -0.5
4,121,220 + CA264_17710 0.19 -0.3
4,121,221 - CA264_17710 0.20 -0.4
4,121,224 + CA264_17710 0.20 -0.5
4,121,224 + CA264_17710 0.20 -0.6
4,121,225 - CA264_17710 0.20 -0.4
4,121,235 - CA264_17710 0.21 -1.3
4,121,239 - CA264_17710 0.22 -0.3
4,121,260 + CA264_17710 0.25 -2.7
4,121,297 - CA264_17710 0.30 -0.6
4,121,297 - CA264_17710 0.30 -0.2
4,121,298 + CA264_17710 0.30 -0.8
4,121,299 - CA264_17710 0.30 +0.2
4,121,316 - CA264_17710 0.32 -0.5
4,121,381 - CA264_17710 0.41 -0.1
4,121,458 + CA264_17710 0.52 +1.5
4,121,459 - CA264_17710 0.52 -0.4
4,121,459 - CA264_17710 0.52 +0.3
4,121,476 + CA264_17710 0.54 -0.5
4,121,476 + CA264_17710 0.54 -2.0
4,121,704 + CA264_17710 0.85 -1.2
4,121,704 + CA264_17710 0.85 -1.8
4,121,705 - CA264_17710 0.85 -0.8
4,121,710 + CA264_17710 0.86 -0.5
4,121,711 - CA264_17710 0.86 -1.1
4,121,716 + CA264_17710 0.87 -0.3
4,121,716 + CA264_17710 0.87 -0.3
4,121,717 - CA264_17710 0.87 +0.5
4,121,744 - -0.1
4,121,744 - -0.6
4,121,750 - +0.4
4,121,883 + -0.4
4,121,888 + -0.7
4,121,981 - +3.2
4,122,021 + -0.0
4,122,552 + -0.1
4,122,557 + -0.7
4,122,557 + +0.1
4,122,557 + +0.3
4,122,558 - -0.6
4,122,558 - -0.4
4,122,572 - -0.0
4,122,582 - +0.2
4,122,595 - -1.3
4,122,629 + -0.5
4,122,629 + -0.1
4,122,629 + +0.5
4,122,636 + +0.4
4,122,636 + -0.4
4,122,636 + -0.1
4,122,637 - +1.8
4,122,639 - -0.4
4,122,639 - +0.8
4,122,640 + -0.2
4,122,640 + -0.3
4,122,641 - +1.6
4,122,641 - -0.3
4,122,648 - -0.5
4,122,649 + -0.0
4,122,649 + +0.6
4,122,650 - +0.5
4,122,653 + +0.7
4,122,653 + +0.7
4,122,653 + -0.6
4,122,654 - +0.2
4,122,654 - -0.2

Or see this region's nucleotide sequence