Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17205

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17195 and CA264_17200 are separated by 167 nucleotidesCA264_17200 and CA264_17205 are separated by 161 nucleotidesCA264_17205 and CA264_17210 are separated by 72 nucleotidesCA264_17210 and CA264_17215 are separated by 5 nucleotides CA264_17195: CA264_17195 - hypothetical protein, at 4,001,086 to 4,001,760 _17195 CA264_17200: CA264_17200 - peptide-methionine (S)-S-oxide reductase, at 4,001,928 to 4,002,473 _17200 CA264_17205: CA264_17205 - diacylglycerol kinase, at 4,002,635 to 4,003,033 _17205 CA264_17210: CA264_17210 - hypothetical protein, at 4,003,106 to 4,003,510 _17210 CA264_17215: CA264_17215 - damage-inducible protein DinB, at 4,003,516 to 4,003,992 _17215 Position (kb) 4002 4003 4004Strain fitness (log2 ratio) -2 -1 0 1at 4001.637 kb on + strand, within CA264_17195at 4001.638 kb on - strand, within CA264_17195at 4001.638 kb on - strand, within CA264_17195at 4001.638 kb on - strand, within CA264_17195at 4001.715 kb on + strandat 4001.719 kb on + strandat 4001.719 kb on + strandat 4001.751 kb on + strandat 4001.752 kb on - strandat 4001.763 kb on - strandat 4001.778 kb on - strandat 4001.830 kb on + strandat 4001.851 kb on - strandat 4001.851 kb on - strandat 4001.857 kb on - strandat 4001.862 kb on - strandat 4001.869 kb on + strandat 4001.870 kb on - strandat 4001.875 kb on + strandat 4001.926 kb on - strandat 4001.926 kb on - strandat 4001.926 kb on - strandat 4001.935 kb on + strandat 4001.936 kb on - strandat 4001.966 kb on + strandat 4002.035 kb on - strand, within CA264_17200at 4002.045 kb on - strand, within CA264_17200at 4002.048 kb on + strand, within CA264_17200at 4002.049 kb on - strand, within CA264_17200at 4002.089 kb on - strand, within CA264_17200at 4002.103 kb on - strand, within CA264_17200at 4002.123 kb on + strand, within CA264_17200at 4002.124 kb on - strand, within CA264_17200at 4002.222 kb on + strand, within CA264_17200at 4002.258 kb on + strand, within CA264_17200at 4002.349 kb on - strand, within CA264_17200at 4002.366 kb on - strand, within CA264_17200at 4002.387 kb on + strand, within CA264_17200at 4002.438 kb on - strandat 4002.448 kb on + strandat 4002.489 kb on - strandat 4002.496 kb on + strandat 4002.573 kb on + strandat 4002.596 kb on + strandat 4002.596 kb on + strandat 4002.596 kb on + strandat 4002.598 kb on + strandat 4002.670 kb on + strandat 4002.671 kb on - strandat 4002.961 kb on - strand, within CA264_17205at 4002.961 kb on - strand, within CA264_17205at 4003.106 kb on - strandat 4003.155 kb on + strand, within CA264_17210at 4003.314 kb on - strand, within CA264_17210at 4003.314 kb on - strand, within CA264_17210at 4003.314 kb on - strand, within CA264_17210at 4003.314 kb on - strand, within CA264_17210at 4003.315 kb on + strand, within CA264_17210at 4003.315 kb on + strand, within CA264_17210at 4003.315 kb on + strand, within CA264_17210at 4003.315 kb on + strand, within CA264_17210at 4003.316 kb on - strand, within CA264_17210at 4003.316 kb on - strand, within CA264_17210at 4003.316 kb on - strand, within CA264_17210at 4003.316 kb on - strand, within CA264_17210at 4003.319 kb on + strand, within CA264_17210at 4003.320 kb on - strand, within CA264_17210at 4003.335 kb on + strand, within CA264_17210at 4003.335 kb on + strand, within CA264_17210at 4003.336 kb on - strand, within CA264_17210at 4003.336 kb on - strand, within CA264_17210at 4003.337 kb on + strand, within CA264_17210at 4003.338 kb on - strand, within CA264_17210at 4003.380 kb on - strand, within CA264_17210at 4003.483 kb on - strandat 4003.495 kb on + strandat 4003.533 kb on - strandat 4003.545 kb on - strandat 4003.552 kb on + strandat 4003.553 kb on - strandat 4003.554 kb on + strandat 4003.586 kb on + strand, within CA264_17215at 4003.643 kb on + strand, within CA264_17215at 4003.814 kb on - strand, within CA264_17215at 4003.819 kb on - strand, within CA264_17215at 4003.838 kb on - strand, within CA264_17215at 4003.932 kb on + strand, within CA264_17215at 4003.933 kb on - strand, within CA264_17215at 4003.951 kb on + strandat 4003.960 kb on + strandat 4003.986 kb on - strandat 4003.991 kb on - strandat 4003.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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4,001,637 + CA264_17195 0.82 -0.4
4,001,638 - CA264_17195 0.82 -1.7
4,001,638 - CA264_17195 0.82 -0.6
4,001,638 - CA264_17195 0.82 +0.6
4,001,715 + +1.0
4,001,719 + -0.5
4,001,719 + +0.7
4,001,751 + -0.9
4,001,752 - +1.3
4,001,763 - +0.4
4,001,778 - -0.1
4,001,830 + -1.1
4,001,851 - -0.2
4,001,851 - -0.9
4,001,857 - -0.3
4,001,862 - -0.7
4,001,869 + +1.1
4,001,870 - +0.0
4,001,875 + -0.7
4,001,926 - -0.2
4,001,926 - -0.7
4,001,926 - +0.5
4,001,935 + -0.2
4,001,936 - +0.2
4,001,966 + -2.2
4,002,035 - CA264_17200 0.20 -0.6
4,002,045 - CA264_17200 0.21 +0.3
4,002,048 + CA264_17200 0.22 -0.7
4,002,049 - CA264_17200 0.22 +0.1
4,002,089 - CA264_17200 0.29 +0.5
4,002,103 - CA264_17200 0.32 +0.1
4,002,123 + CA264_17200 0.36 -0.8
4,002,124 - CA264_17200 0.36 -0.9
4,002,222 + CA264_17200 0.54 -0.9
4,002,258 + CA264_17200 0.60 -0.7
4,002,349 - CA264_17200 0.77 -0.5
4,002,366 - CA264_17200 0.80 +0.3
4,002,387 + CA264_17200 0.84 -2.4
4,002,438 - -0.5
4,002,448 + -0.1
4,002,489 - -1.5
4,002,496 + -0.1
4,002,573 + -0.5
4,002,596 + +1.2
4,002,596 + -0.2
4,002,596 + -0.8
4,002,598 + -2.2
4,002,670 + -1.1
4,002,671 - -1.3
4,002,961 - CA264_17205 0.82 -0.7
4,002,961 - CA264_17205 0.82 -1.6
4,003,106 - -0.2
4,003,155 + CA264_17210 0.12 +0.0
4,003,314 - CA264_17210 0.51 +0.2
4,003,314 - CA264_17210 0.51 -0.2
4,003,314 - CA264_17210 0.51 -0.2
4,003,314 - CA264_17210 0.51 +0.1
4,003,315 + CA264_17210 0.52 -0.5
4,003,315 + CA264_17210 0.52 -0.4
4,003,315 + CA264_17210 0.52 -0.3
4,003,315 + CA264_17210 0.52 +0.3
4,003,316 - CA264_17210 0.52 +1.4
4,003,316 - CA264_17210 0.52 -0.9
4,003,316 - CA264_17210 0.52 +0.6
4,003,316 - CA264_17210 0.52 -0.1
4,003,319 + CA264_17210 0.53 +0.2
4,003,320 - CA264_17210 0.53 +0.8
4,003,335 + CA264_17210 0.57 +0.8
4,003,335 + CA264_17210 0.57 +0.3
4,003,336 - CA264_17210 0.57 -0.2
4,003,336 - CA264_17210 0.57 +0.0
4,003,337 + CA264_17210 0.57 -1.1
4,003,338 - CA264_17210 0.57 +0.3
4,003,380 - CA264_17210 0.68 -0.1
4,003,483 - +0.5
4,003,495 + -1.1
4,003,533 - -0.4
4,003,545 - -0.3
4,003,552 + -0.3
4,003,553 - -0.3
4,003,554 + -0.6
4,003,586 + CA264_17215 0.15 -0.5
4,003,643 + CA264_17215 0.27 +1.2
4,003,814 - CA264_17215 0.62 +0.2
4,003,819 - CA264_17215 0.64 -0.2
4,003,838 - CA264_17215 0.68 +0.7
4,003,932 + CA264_17215 0.87 -1.0
4,003,933 - CA264_17215 0.87 +1.0
4,003,951 + +1.3
4,003,960 + +0.1
4,003,986 - +0.6
4,003,991 - -0.4
4,003,995 - +0.4

Or see this region's nucleotide sequence