Experiment: m.b. Chlorite 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16830 and CA264_16835 are separated by 40 nucleotides CA264_16835 and CA264_16840 are separated by 118 nucleotides CA264_16840 and CA264_16845 are separated by 140 nucleotides
CA264_16830: CA264_16830 - (2Fe-2S)-binding protein, at 3,927,696 to 3,929,228
_16830
CA264_16835: CA264_16835 - hypothetical protein, at 3,929,269 to 3,929,685
_16835
CA264_16840: CA264_16840 - hypothetical protein, at 3,929,804 to 3,930,433
_16840
CA264_16845: CA264_16845 - T9SS C-terminal target domain-containing protein, at 3,930,574 to 3,932,214
_16845
Position (kb)
3929
3930 Strain fitness (log2 ratio)
-1
0
1
2 at 3928.325 kb on - strand, within CA264_16830 at 3928.371 kb on - strand, within CA264_16830 at 3928.500 kb on + strand, within CA264_16830 at 3928.602 kb on - strand, within CA264_16830 at 3928.641 kb on + strand, within CA264_16830 at 3928.642 kb on - strand, within CA264_16830 at 3928.642 kb on - strand, within CA264_16830 at 3928.664 kb on - strand, within CA264_16830 at 3928.699 kb on - strand, within CA264_16830 at 3928.722 kb on + strand, within CA264_16830 at 3928.722 kb on + strand, within CA264_16830 at 3928.723 kb on - strand, within CA264_16830 at 3928.755 kb on + strand, within CA264_16830 at 3928.755 kb on + strand, within CA264_16830 at 3928.755 kb on + strand, within CA264_16830 at 3928.756 kb on - strand, within CA264_16830 at 3928.829 kb on - strand, within CA264_16830 at 3928.829 kb on - strand, within CA264_16830 at 3928.829 kb on - strand, within CA264_16830 at 3928.947 kb on + strand, within CA264_16830 at 3928.948 kb on - strand, within CA264_16830 at 3928.948 kb on - strand, within CA264_16830 at 3928.956 kb on + strand, within CA264_16830 at 3929.108 kb on + strand at 3929.195 kb on + strand at 3929.195 kb on + strand at 3929.261 kb on + strand at 3929.261 kb on + strand at 3929.261 kb on + strand at 3929.264 kb on - strand at 3929.270 kb on + strand at 3929.642 kb on + strand, within CA264_16835 at 3929.642 kb on + strand, within CA264_16835 at 3929.642 kb on + strand, within CA264_16835 at 3929.643 kb on - strand, within CA264_16835 at 3929.645 kb on + strand at 3929.646 kb on - strand at 3929.648 kb on - strand at 3929.685 kb on + strand at 3929.686 kb on - strand at 3929.691 kb on + strand at 3929.692 kb on - strand at 3929.701 kb on + strand at 3929.701 kb on + strand at 3929.702 kb on - strand at 3929.702 kb on - strand at 3929.704 kb on - strand at 3929.705 kb on + strand at 3929.705 kb on + strand at 3929.711 kb on + strand at 3929.711 kb on + strand at 3929.712 kb on - strand at 3929.713 kb on + strand at 3929.713 kb on + strand at 3929.713 kb on + strand at 3929.714 kb on - strand at 3929.790 kb on + strand at 3929.801 kb on + strand at 3929.802 kb on - strand at 3929.805 kb on + strand at 3929.805 kb on + strand at 3929.806 kb on - strand at 3929.806 kb on - strand at 3929.826 kb on - strand at 3929.991 kb on + strand, within CA264_16840 at 3929.992 kb on - strand, within CA264_16840 at 3930.017 kb on - strand, within CA264_16840 at 3930.151 kb on - strand, within CA264_16840 at 3930.151 kb on - strand, within CA264_16840 at 3930.160 kb on - strand, within CA264_16840 at 3930.160 kb on - strand, within CA264_16840 at 3930.241 kb on + strand, within CA264_16840 at 3930.294 kb on + strand, within CA264_16840 at 3930.299 kb on - strand, within CA264_16840 at 3930.347 kb on + strand, within CA264_16840 at 3930.348 kb on - strand, within CA264_16840 at 3930.399 kb on - strand at 3930.410 kb on + strand at 3930.411 kb on - strand at 3930.448 kb on - strand at 3930.450 kb on + strand at 3930.451 kb on - strand at 3930.455 kb on - strand at 3930.455 kb on - strand at 3930.455 kb on - strand at 3930.502 kb on - strand at 3930.571 kb on + strand at 3930.572 kb on - strand at 3930.576 kb on - strand at 3930.632 kb on + strand at 3930.633 kb on - strand at 3930.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM remove 3,928,325 - CA264_16830 0.41 +0.1 3,928,371 - CA264_16830 0.44 -1.2 3,928,500 + CA264_16830 0.52 -0.1 3,928,602 - CA264_16830 0.59 +0.7 3,928,641 + CA264_16830 0.62 -1.1 3,928,642 - CA264_16830 0.62 +0.9 3,928,642 - CA264_16830 0.62 -0.6 3,928,664 - CA264_16830 0.63 -0.1 3,928,699 - CA264_16830 0.65 -0.6 3,928,722 + CA264_16830 0.67 -0.1 3,928,722 + CA264_16830 0.67 +0.5 3,928,723 - CA264_16830 0.67 +0.1 3,928,755 + CA264_16830 0.69 -0.3 3,928,755 + CA264_16830 0.69 +0.3 3,928,755 + CA264_16830 0.69 +0.4 3,928,756 - CA264_16830 0.69 -0.6 3,928,829 - CA264_16830 0.74 -0.1 3,928,829 - CA264_16830 0.74 +0.1 3,928,829 - CA264_16830 0.74 -1.5 3,928,947 + CA264_16830 0.82 -0.9 3,928,948 - CA264_16830 0.82 -0.2 3,928,948 - CA264_16830 0.82 +1.9 3,928,956 + CA264_16830 0.82 -0.5 3,929,108 + -1.1 3,929,195 + -0.1 3,929,195 + -0.3 3,929,261 + +0.8 3,929,261 + -0.7 3,929,261 + +0.6 3,929,264 - +0.7 3,929,270 + -0.6 3,929,642 + CA264_16835 0.89 -0.1 3,929,642 + CA264_16835 0.89 +0.1 3,929,642 + CA264_16835 0.89 -0.6 3,929,643 - CA264_16835 0.90 -0.6 3,929,645 + +0.1 3,929,646 - -0.2 3,929,648 - -0.4 3,929,685 + -0.8 3,929,686 - +1.9 3,929,691 + +0.4 3,929,692 - +1.6 3,929,701 + +2.0 3,929,701 + +0.3 3,929,702 - +0.8 3,929,702 - +1.1 3,929,704 - +0.1 3,929,705 + +0.3 3,929,705 + +0.2 3,929,711 + +0.4 3,929,711 + +0.2 3,929,712 - +0.4 3,929,713 + -0.6 3,929,713 + +0.4 3,929,713 + -0.5 3,929,714 - -0.2 3,929,790 + +0.1 3,929,801 + +0.7 3,929,802 - +0.0 3,929,805 + +0.1 3,929,805 + -0.5 3,929,806 - -0.5 3,929,806 - +1.4 3,929,826 - +1.7 3,929,991 + CA264_16840 0.30 +1.2 3,929,992 - CA264_16840 0.30 -0.1 3,930,017 - CA264_16840 0.34 +0.2 3,930,151 - CA264_16840 0.55 -0.3 3,930,151 - CA264_16840 0.55 +0.7 3,930,160 - CA264_16840 0.57 +1.0 3,930,160 - CA264_16840 0.57 -0.4 3,930,241 + CA264_16840 0.69 +1.4 3,930,294 + CA264_16840 0.78 +0.5 3,930,299 - CA264_16840 0.79 +1.6 3,930,347 + CA264_16840 0.86 -0.1 3,930,348 - CA264_16840 0.86 +0.6 3,930,399 - -1.4 3,930,410 + -0.0 3,930,411 - +1.1 3,930,448 - +0.5 3,930,450 + -0.7 3,930,451 - +0.3 3,930,455 - +1.1 3,930,455 - -0.2 3,930,455 - -1.2 3,930,502 - +1.1 3,930,571 + -0.0 3,930,572 - +0.5 3,930,576 - -0.1 3,930,632 + -0.6 3,930,633 - -0.4 3,930,637 - +0.1
Or see this region's nucleotide sequence