Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13345

Experiment: m.b. Chlorite 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13340 and CA264_13345 are separated by 504 nucleotidesCA264_13345 and CA264_13350 are separated by 101 nucleotidesCA264_13350 and CA264_13355 are separated by 75 nucleotides CA264_13340: CA264_13340 - iron-sulfur cluster assembly accessory protein, at 3,112,081 to 3,112,428 _13340 CA264_13345: CA264_13345 - iron-regulated protein, at 3,112,933 to 3,113,814 _13345 CA264_13350: CA264_13350 - hypothetical protein, at 3,113,916 to 3,114,578 _13350 CA264_13355: CA264_13355 - ABC transporter permease, at 3,114,654 to 3,116,009 _13355 Position (kb) 3112 3113 3114Strain fitness (log2 ratio) -2 -1 0 1 2at 3111.935 kb on + strandat 3111.948 kb on - strandat 3112.011 kb on + strandat 3112.011 kb on + strandat 3112.012 kb on - strandat 3112.078 kb on - strandat 3112.110 kb on - strandat 3112.110 kb on - strandat 3112.110 kb on - strandat 3112.300 kb on - strand, within CA264_13340at 3112.389 kb on + strand, within CA264_13340at 3112.390 kb on - strand, within CA264_13340at 3112.471 kb on + strandat 3112.494 kb on - strandat 3112.494 kb on - strandat 3112.500 kb on - strandat 3112.500 kb on - strandat 3112.604 kb on + strandat 3112.605 kb on - strandat 3112.605 kb on - strandat 3112.612 kb on - strandat 3112.613 kb on + strandat 3112.669 kb on - strandat 3112.726 kb on - strandat 3112.823 kb on - strandat 3112.841 kb on - strandat 3112.841 kb on - strandat 3112.970 kb on - strandat 3112.972 kb on - strandat 3113.012 kb on - strandat 3113.071 kb on + strand, within CA264_13345at 3113.072 kb on - strand, within CA264_13345at 3113.072 kb on - strand, within CA264_13345at 3113.137 kb on - strand, within CA264_13345at 3113.158 kb on + strand, within CA264_13345at 3113.175 kb on + strand, within CA264_13345at 3113.309 kb on + strand, within CA264_13345at 3113.309 kb on + strand, within CA264_13345at 3113.442 kb on + strand, within CA264_13345at 3113.442 kb on + strand, within CA264_13345at 3113.445 kb on - strand, within CA264_13345at 3113.456 kb on + strand, within CA264_13345at 3113.584 kb on - strand, within CA264_13345at 3113.584 kb on - strand, within CA264_13345at 3113.699 kb on + strand, within CA264_13345at 3113.704 kb on + strand, within CA264_13345at 3113.705 kb on - strand, within CA264_13345at 3113.819 kb on + strandat 3113.820 kb on - strandat 3113.842 kb on + strandat 3113.843 kb on - strandat 3113.886 kb on + strandat 3113.886 kb on + strandat 3113.889 kb on - strandat 3113.889 kb on - strandat 3113.889 kb on - strandat 3113.893 kb on + strandat 3113.894 kb on - strandat 3113.917 kb on + strandat 3113.926 kb on - strandat 3113.926 kb on - strandat 3113.926 kb on - strandat 3114.039 kb on + strand, within CA264_13350at 3114.039 kb on + strand, within CA264_13350at 3114.083 kb on + strand, within CA264_13350at 3114.084 kb on - strand, within CA264_13350at 3114.085 kb on + strand, within CA264_13350at 3114.085 kb on + strand, within CA264_13350at 3114.086 kb on - strand, within CA264_13350at 3114.225 kb on - strand, within CA264_13350at 3114.256 kb on - strand, within CA264_13350at 3114.415 kb on - strand, within CA264_13350at 3114.443 kb on - strandat 3114.479 kb on + strand, within CA264_13350at 3114.496 kb on - strand, within CA264_13350at 3114.501 kb on + strand, within CA264_13350at 3114.502 kb on - strand, within CA264_13350at 3114.567 kb on + strandat 3114.568 kb on - strandat 3114.655 kb on + strandat 3114.656 kb on - strandat 3114.656 kb on - strandat 3114.692 kb on - strandat 3114.692 kb on - strandat 3114.710 kb on - strandat 3114.731 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
remove
3,111,935 + -0.3
3,111,948 - +1.6
3,112,011 + -0.1
3,112,011 + -0.3
3,112,012 - +0.1
3,112,078 - +0.1
3,112,110 - +0.1
3,112,110 - -0.2
3,112,110 - +0.1
3,112,300 - CA264_13340 0.63 -0.6
3,112,389 + CA264_13340 0.89 +0.3
3,112,390 - CA264_13340 0.89 +0.0
3,112,471 + +0.2
3,112,494 - -0.1
3,112,494 - -0.2
3,112,500 - -0.0
3,112,500 - -0.3
3,112,604 + -0.4
3,112,605 - +0.7
3,112,605 - -0.2
3,112,612 - -0.3
3,112,613 + +0.4
3,112,669 - +1.8
3,112,726 - -0.2
3,112,823 - -0.0
3,112,841 - -0.0
3,112,841 - -1.6
3,112,970 - -0.7
3,112,972 - +1.3
3,113,012 - +0.1
3,113,071 + CA264_13345 0.16 +0.5
3,113,072 - CA264_13345 0.16 -1.7
3,113,072 - CA264_13345 0.16 -0.6
3,113,137 - CA264_13345 0.23 -1.0
3,113,158 + CA264_13345 0.26 -1.9
3,113,175 + CA264_13345 0.27 -0.4
3,113,309 + CA264_13345 0.43 +0.3
3,113,309 + CA264_13345 0.43 -0.1
3,113,442 + CA264_13345 0.58 -0.1
3,113,442 + CA264_13345 0.58 -1.6
3,113,445 - CA264_13345 0.58 -0.7
3,113,456 + CA264_13345 0.59 +0.0
3,113,584 - CA264_13345 0.74 -0.5
3,113,584 - CA264_13345 0.74 -0.5
3,113,699 + CA264_13345 0.87 +0.2
3,113,704 + CA264_13345 0.87 -0.0
3,113,705 - CA264_13345 0.88 -1.1
3,113,819 + +0.3
3,113,820 - -0.7
3,113,842 + -0.5
3,113,843 - -0.2
3,113,886 + -0.9
3,113,886 + +1.7
3,113,889 - +0.1
3,113,889 - +0.4
3,113,889 - +0.1
3,113,893 + -0.2
3,113,894 - -0.3
3,113,917 + +0.5
3,113,926 - +0.8
3,113,926 - -0.3
3,113,926 - +0.1
3,114,039 + CA264_13350 0.19 -1.3
3,114,039 + CA264_13350 0.19 -0.2
3,114,083 + CA264_13350 0.25 -0.6
3,114,084 - CA264_13350 0.25 -0.2
3,114,085 + CA264_13350 0.25 +0.3
3,114,085 + CA264_13350 0.25 +0.6
3,114,086 - CA264_13350 0.26 -0.7
3,114,225 - CA264_13350 0.47 -1.3
3,114,256 - CA264_13350 0.51 +0.1
3,114,415 - CA264_13350 0.75 -0.5
3,114,443 - +0.1
3,114,479 + CA264_13350 0.85 +0.0
3,114,496 - CA264_13350 0.87 +1.4
3,114,501 + CA264_13350 0.88 -0.4
3,114,502 - CA264_13350 0.88 -0.1
3,114,567 + -1.1
3,114,568 - -0.0
3,114,655 + +1.4
3,114,656 - +0.7
3,114,656 - +0.1
3,114,692 - -0.4
3,114,692 - -0.4
3,114,710 - +0.5
3,114,731 - +0.3

Or see this region's nucleotide sequence