Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09050

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09045 and CA264_09050 are separated by 22 nucleotidesCA264_09050 and CA264_09055 are separated by 751 nucleotides CA264_09045: CA264_09045 - SusC/RagA family protein, at 2,114,955 to 2,118,245 _09045 CA264_09050: CA264_09050 - hypothetical protein, at 2,118,268 to 2,119,308 _09050 CA264_09055: CA264_09055 - PAS domain-containing sensor histidine kinase, at 2,120,060 to 2,122,249 _09055 Position (kb) 2118 2119 2120Strain fitness (log2 ratio) -1 0 1at 2117.466 kb on - strand, within CA264_09045at 2117.674 kb on + strand, within CA264_09045at 2117.678 kb on + strand, within CA264_09045at 2117.715 kb on - strand, within CA264_09045at 2117.788 kb on - strand, within CA264_09045at 2117.905 kb on + strand, within CA264_09045at 2117.905 kb on + strand, within CA264_09045at 2117.905 kb on + strand, within CA264_09045at 2117.905 kb on + strand, within CA264_09045at 2117.906 kb on - strand, within CA264_09045at 2117.916 kb on + strand, within CA264_09045at 2117.924 kb on + strandat 2117.925 kb on - strandat 2117.925 kb on - strandat 2118.055 kb on + strandat 2118.056 kb on - strandat 2118.056 kb on - strandat 2118.114 kb on + strandat 2118.117 kb on + strandat 2118.155 kb on - strandat 2118.155 kb on - strandat 2118.258 kb on - strandat 2118.374 kb on + strand, within CA264_09050at 2118.382 kb on - strand, within CA264_09050at 2118.432 kb on - strand, within CA264_09050at 2118.643 kb on + strand, within CA264_09050at 2118.669 kb on + strand, within CA264_09050at 2118.700 kb on + strand, within CA264_09050at 2118.750 kb on + strand, within CA264_09050at 2118.913 kb on + strand, within CA264_09050at 2119.064 kb on + strand, within CA264_09050at 2119.064 kb on + strand, within CA264_09050at 2119.064 kb on - strand, within CA264_09050at 2119.172 kb on - strand, within CA264_09050at 2119.206 kb on - strandat 2119.296 kb on - strandat 2119.327 kb on - strandat 2119.340 kb on + strandat 2119.361 kb on + strandat 2119.363 kb on + strandat 2119.364 kb on - strandat 2119.485 kb on + strandat 2119.506 kb on - strandat 2119.571 kb on - strandat 2119.571 kb on - strandat 2119.592 kb on + strandat 2119.619 kb on + strandat 2119.622 kb on - strandat 2119.722 kb on - strandat 2119.838 kb on - strandat 2119.846 kb on - strandat 2119.846 kb on - strandat 2119.853 kb on + strandat 2119.854 kb on - strandat 2119.898 kb on + strandat 2119.920 kb on - strandat 2119.926 kb on - strandat 2119.931 kb on - strandat 2119.936 kb on + strandat 2119.937 kb on - strandat 2119.944 kb on - strandat 2119.944 kb on - strandat 2119.949 kb on - strandat 2119.955 kb on + strandat 2119.955 kb on + strandat 2119.967 kb on + strandat 2119.992 kb on - strandat 2120.019 kb on - strandat 2120.019 kb on - strandat 2120.021 kb on + strandat 2120.023 kb on + strandat 2120.023 kb on + strandat 2120.023 kb on + strandat 2120.023 kb on + strandat 2120.024 kb on - strandat 2120.024 kb on - strandat 2120.024 kb on - strandat 2120.053 kb on + strandat 2120.053 kb on + strandat 2120.054 kb on - strandat 2120.055 kb on + strandat 2120.055 kb on + strandat 2120.055 kb on + strandat 2120.055 kb on + strandat 2120.055 kb on + strandat 2120.055 kb on + strandat 2120.059 kb on + strandat 2120.059 kb on + strandat 2120.060 kb on - strandat 2120.060 kb on - strandat 2120.077 kb on - strandat 2120.224 kb on + strandat 2120.224 kb on + strandat 2120.224 kb on + strandat 2120.226 kb on + strandat 2120.226 kb on + strandat 2120.251 kb on - strandat 2120.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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2,117,466 - CA264_09045 0.76 +1.3
2,117,674 + CA264_09045 0.83 -0.5
2,117,678 + CA264_09045 0.83 -0.4
2,117,715 - CA264_09045 0.84 +0.3
2,117,788 - CA264_09045 0.86 -1.3
2,117,905 + CA264_09045 0.90 -0.4
2,117,905 + CA264_09045 0.90 +1.0
2,117,905 + CA264_09045 0.90 -0.2
2,117,905 + CA264_09045 0.90 -1.1
2,117,906 - CA264_09045 0.90 +0.8
2,117,916 + CA264_09045 0.90 -1.7
2,117,924 + +0.3
2,117,925 - -1.5
2,117,925 - -0.7
2,118,055 + +0.4
2,118,056 - -0.3
2,118,056 - -0.0
2,118,114 + +0.5
2,118,117 + +0.0
2,118,155 - -1.0
2,118,155 - -0.7
2,118,258 - -0.4
2,118,374 + CA264_09050 0.10 -0.3
2,118,382 - CA264_09050 0.11 +0.4
2,118,432 - CA264_09050 0.16 +0.4
2,118,643 + CA264_09050 0.36 -0.3
2,118,669 + CA264_09050 0.39 +1.6
2,118,700 + CA264_09050 0.41 -0.4
2,118,750 + CA264_09050 0.46 +0.4
2,118,913 + CA264_09050 0.62 +0.2
2,119,064 + CA264_09050 0.76 +0.8
2,119,064 + CA264_09050 0.76 -0.6
2,119,064 - CA264_09050 0.76 +1.1
2,119,172 - CA264_09050 0.87 +1.1
2,119,206 - +0.1
2,119,296 - +1.3
2,119,327 - +0.1
2,119,340 + -0.4
2,119,361 + -1.0
2,119,363 + -0.2
2,119,364 - +0.6
2,119,485 + +0.2
2,119,506 - +0.2
2,119,571 - -1.3
2,119,571 - +0.2
2,119,592 + -0.4
2,119,619 + +0.2
2,119,622 - +0.2
2,119,722 - -0.2
2,119,838 - -0.3
2,119,846 - -0.8
2,119,846 - +0.2
2,119,853 + -0.4
2,119,854 - -0.1
2,119,898 + -0.8
2,119,920 - +0.9
2,119,926 - +0.3
2,119,931 - -1.6
2,119,936 + +0.6
2,119,937 - +0.2
2,119,944 - -0.7
2,119,944 - -0.4
2,119,949 - -0.2
2,119,955 + -0.7
2,119,955 + -0.8
2,119,967 + +0.1
2,119,992 - -0.3
2,120,019 - +0.8
2,120,019 - -0.7
2,120,021 + +0.1
2,120,023 + +0.3
2,120,023 + -0.8
2,120,023 + -0.6
2,120,023 + -0.1
2,120,024 - +0.5
2,120,024 - +1.2
2,120,024 - -1.2
2,120,053 + +0.2
2,120,053 + -0.0
2,120,054 - -1.7
2,120,055 + -0.1
2,120,055 + +0.6
2,120,055 + -1.2
2,120,055 + -0.5
2,120,055 + +0.6
2,120,055 + -0.6
2,120,059 + +0.4
2,120,059 + +0.2
2,120,060 - -0.0
2,120,060 - +0.4
2,120,077 - -0.2
2,120,224 + -0.3
2,120,224 + +0.1
2,120,224 + -0.5
2,120,226 + -1.6
2,120,226 + -0.5
2,120,251 - -0.7
2,120,251 - -0.1

Or see this region's nucleotide sequence