Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07180

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07175 and CA264_07180 are separated by 14 nucleotidesCA264_07180 and CA264_07185 overlap by 8 nucleotidesCA264_07185 and CA264_07190 are separated by 292 nucleotides CA264_07175: CA264_07175 - secretion protein HlyD, at 1,658,407 to 1,659,453 _07175 CA264_07180: CA264_07180 - transporter, at 1,659,468 to 1,660,811 _07180 CA264_07185: CA264_07185 - TetR family transcriptional regulator, at 1,660,804 to 1,661,439 _07185 CA264_07190: CA264_07190 - hypothetical protein, at 1,661,732 to 1,662,331 _07190 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -2 -1 0 1at 1658.513 kb on - strand, within CA264_07175at 1658.513 kb on - strand, within CA264_07175at 1658.591 kb on + strand, within CA264_07175at 1658.605 kb on + strand, within CA264_07175at 1658.605 kb on + strand, within CA264_07175at 1658.695 kb on + strand, within CA264_07175at 1658.696 kb on - strand, within CA264_07175at 1658.699 kb on + strand, within CA264_07175at 1658.813 kb on + strand, within CA264_07175at 1658.874 kb on + strand, within CA264_07175at 1658.946 kb on - strand, within CA264_07175at 1659.000 kb on + strand, within CA264_07175at 1659.000 kb on + strand, within CA264_07175at 1659.003 kb on + strand, within CA264_07175at 1659.004 kb on - strand, within CA264_07175at 1659.036 kb on + strand, within CA264_07175at 1659.065 kb on - strand, within CA264_07175at 1659.065 kb on - strand, within CA264_07175at 1659.136 kb on + strand, within CA264_07175at 1659.190 kb on + strand, within CA264_07175at 1659.268 kb on - strand, within CA264_07175at 1659.268 kb on - strand, within CA264_07175at 1659.268 kb on - strand, within CA264_07175at 1659.354 kb on - strandat 1659.359 kb on + strandat 1659.359 kb on + strandat 1659.391 kb on + strandat 1659.394 kb on - strandat 1659.439 kb on - strandat 1659.469 kb on + strandat 1659.473 kb on + strandat 1659.474 kb on - strandat 1659.477 kb on + strandat 1659.503 kb on + strandat 1659.503 kb on + strandat 1659.505 kb on + strandat 1659.508 kb on + strandat 1659.509 kb on - strandat 1659.707 kb on - strand, within CA264_07180at 1659.756 kb on - strand, within CA264_07180at 1659.865 kb on + strand, within CA264_07180at 1659.866 kb on - strand, within CA264_07180at 1659.903 kb on + strand, within CA264_07180at 1659.908 kb on - strand, within CA264_07180at 1659.963 kb on + strand, within CA264_07180at 1660.005 kb on + strand, within CA264_07180at 1660.020 kb on + strand, within CA264_07180at 1660.021 kb on - strand, within CA264_07180at 1660.039 kb on + strand, within CA264_07180at 1660.228 kb on - strand, within CA264_07180at 1660.228 kb on - strand, within CA264_07180at 1660.324 kb on + strand, within CA264_07180at 1660.352 kb on + strand, within CA264_07180at 1660.382 kb on + strand, within CA264_07180at 1660.507 kb on + strand, within CA264_07180at 1660.510 kb on + strand, within CA264_07180at 1660.510 kb on + strand, within CA264_07180at 1660.510 kb on + strand, within CA264_07180at 1660.511 kb on - strand, within CA264_07180at 1660.542 kb on - strand, within CA264_07180at 1660.568 kb on - strand, within CA264_07180at 1660.571 kb on + strand, within CA264_07180at 1660.571 kb on + strand, within CA264_07180at 1660.572 kb on - strand, within CA264_07180at 1660.572 kb on - strand, within CA264_07180at 1660.573 kb on + strand, within CA264_07180at 1660.806 kb on - strandat 1660.826 kb on - strandat 1660.836 kb on + strandat 1660.851 kb on + strandat 1660.955 kb on + strand, within CA264_07185at 1660.969 kb on + strand, within CA264_07185at 1660.996 kb on + strand, within CA264_07185at 1660.996 kb on + strand, within CA264_07185at 1661.004 kb on + strand, within CA264_07185at 1661.080 kb on - strand, within CA264_07185at 1661.081 kb on + strand, within CA264_07185at 1661.081 kb on + strand, within CA264_07185at 1661.082 kb on - strand, within CA264_07185at 1661.133 kb on + strand, within CA264_07185at 1661.168 kb on + strand, within CA264_07185at 1661.169 kb on - strand, within CA264_07185at 1661.169 kb on - strand, within CA264_07185at 1661.169 kb on - strand, within CA264_07185at 1661.301 kb on - strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.308 kb on - strand, within CA264_07185at 1661.500 kb on + strandat 1661.583 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.658 kb on - strandat 1661.665 kb on + strandat 1661.672 kb on - strandat 1661.682 kb on + strandat 1661.739 kb on + strandat 1661.756 kb on + strandat 1661.756 kb on + strandat 1661.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,658,513 - CA264_07175 0.10 +0.3
1,658,513 - CA264_07175 0.10 -1.1
1,658,591 + CA264_07175 0.18 +0.1
1,658,605 + CA264_07175 0.19 -0.5
1,658,605 + CA264_07175 0.19 -0.9
1,658,695 + CA264_07175 0.28 +0.3
1,658,696 - CA264_07175 0.28 +0.3
1,658,699 + CA264_07175 0.28 +0.0
1,658,813 + CA264_07175 0.39 -0.3
1,658,874 + CA264_07175 0.45 -0.1
1,658,946 - CA264_07175 0.51 -0.6
1,659,000 + CA264_07175 0.57 -0.1
1,659,000 + CA264_07175 0.57 -0.1
1,659,003 + CA264_07175 0.57 -0.3
1,659,004 - CA264_07175 0.57 +0.2
1,659,036 + CA264_07175 0.60 +0.6
1,659,065 - CA264_07175 0.63 -0.2
1,659,065 - CA264_07175 0.63 -0.7
1,659,136 + CA264_07175 0.70 +0.2
1,659,190 + CA264_07175 0.75 -1.4
1,659,268 - CA264_07175 0.82 -0.2
1,659,268 - CA264_07175 0.82 -0.2
1,659,268 - CA264_07175 0.82 -0.6
1,659,354 - +0.4
1,659,359 + -1.1
1,659,359 + +0.2
1,659,391 + +0.7
1,659,394 - -1.2
1,659,439 - +0.8
1,659,469 + +0.7
1,659,473 + +0.9
1,659,474 - +0.5
1,659,477 + -1.0
1,659,503 + +1.3
1,659,503 + -0.1
1,659,505 + -0.2
1,659,508 + -0.2
1,659,509 - -0.1
1,659,707 - CA264_07180 0.18 -1.0
1,659,756 - CA264_07180 0.21 +0.1
1,659,865 + CA264_07180 0.30 -0.3
1,659,866 - CA264_07180 0.30 +0.3
1,659,903 + CA264_07180 0.32 -0.2
1,659,908 - CA264_07180 0.33 +0.4
1,659,963 + CA264_07180 0.37 +0.7
1,660,005 + CA264_07180 0.40 -0.8
1,660,020 + CA264_07180 0.41 +0.0
1,660,021 - CA264_07180 0.41 +0.2
1,660,039 + CA264_07180 0.42 -1.0
1,660,228 - CA264_07180 0.57 -0.2
1,660,228 - CA264_07180 0.57 -0.1
1,660,324 + CA264_07180 0.64 +0.3
1,660,352 + CA264_07180 0.66 -0.2
1,660,382 + CA264_07180 0.68 -0.8
1,660,507 + CA264_07180 0.77 -0.6
1,660,510 + CA264_07180 0.78 -0.2
1,660,510 + CA264_07180 0.78 +0.0
1,660,510 + CA264_07180 0.78 +0.1
1,660,511 - CA264_07180 0.78 +1.1
1,660,542 - CA264_07180 0.80 -1.0
1,660,568 - CA264_07180 0.82 -1.3
1,660,571 + CA264_07180 0.82 +1.3
1,660,571 + CA264_07180 0.82 -1.3
1,660,572 - CA264_07180 0.82 +0.2
1,660,572 - CA264_07180 0.82 -0.1
1,660,573 + CA264_07180 0.82 -0.1
1,660,806 - +0.1
1,660,826 - -1.3
1,660,836 + +0.8
1,660,851 + +1.3
1,660,955 + CA264_07185 0.24 -0.5
1,660,969 + CA264_07185 0.26 +0.5
1,660,996 + CA264_07185 0.30 +0.6
1,660,996 + CA264_07185 0.30 +0.2
1,661,004 + CA264_07185 0.31 +1.2
1,661,080 - CA264_07185 0.43 -0.3
1,661,081 + CA264_07185 0.44 -0.5
1,661,081 + CA264_07185 0.44 -1.0
1,661,082 - CA264_07185 0.44 -0.5
1,661,133 + CA264_07185 0.52 +0.4
1,661,168 + CA264_07185 0.57 -0.0
1,661,169 - CA264_07185 0.57 +0.5
1,661,169 - CA264_07185 0.57 +0.3
1,661,169 - CA264_07185 0.57 -0.5
1,661,301 - CA264_07185 0.78 +1.4
1,661,307 + CA264_07185 0.79 +0.3
1,661,307 + CA264_07185 0.79 +0.3
1,661,307 + CA264_07185 0.79 -0.2
1,661,307 + CA264_07185 0.79 +0.1
1,661,308 - CA264_07185 0.79 +0.9
1,661,500 + -0.4
1,661,583 + +0.6
1,661,594 + +0.7
1,661,594 + +0.5
1,661,594 + -2.2
1,661,594 + -1.1
1,661,658 - -0.7
1,661,665 + +0.2
1,661,672 - -0.9
1,661,682 + -1.3
1,661,739 + +0.7
1,661,756 + +0.1
1,661,756 + +0.0
1,661,783 - -0.6

Or see this region's nucleotide sequence